Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g0360 ATGTTCAAGACATCTGAGAAAAATATGAGCAATGCAGAGAACAGCATGGAGAGAGATGAAGTGTTGGGAACGTGGTGGAATGGATTTCCAAACACATCATATCCCAATCTTCATCATTGCCAGCGTTACAATGAGCATTTGGCGATTAACTCCCCTGTATGGAGGGTCTCTCACACATCACATTCTCCTCCGTTAACTTCTTTCGCTGACGGGCTTCATGTTTCTCCCCACAGTTCCTCATACTCAGCTCCATTTCAGGACAGCAAGCATCTAACACCCCACGATCACCACTCAACTAAATTGTTGTTGGACCCCGATTCATCGGATTTCCAAATCGGGAAGAATATCATGGATAATCAAGTGGTTGATCTGGACCTGTCTCGTGATTTCTATAGAATGAATATTATAGACGGACAGGGAAATGGTAACAAAACAAAGGCAACTGAAGCGGACTCCTACGGATTTGGACTCGACGCTTTTTCTTTCGATATAAATATTCCCGGCGTTAATGAAACACGGAGCTCCTATGGAGATTTTTGCAATGAGGTTCCCGCACCTAATTATGAGTGTGTCTCATCGTCTACTTGGGGAGTTTCACCGAGTATGGTCGCTGATATGAAGTGGGCTAACCATGCCTCCGAGAAAGGATACACTCCTTCCCTCGCACATGGTCAGTCCAGCGCTTTGAATTTGTGCTCTGGTTGGAACATGAACCAAACATATCCTCAAATGGAGCACAGCAAGAAACAGGGGAGCAGTAGCTATGATGGAGAAATTCAACTGCAGAAGCCATCTATCATCAACCCCTTCCTTTGTGATGGTTTAAATAGCTCAAAACTTTGTGGAGTGGATTATGATAGAAGTAGGAGTGTCGAAAACCCCTTAAGATTCTCTCAAATTATGCACCCCAAGCTAGCTTCACTTCAGGATACAAACGAAAAAACAAGGGGAATTGCTAACTTTGAGCTGCCTGAATTTCTCTCGTCCAGAAGAGCTGGTGGCAATCCAATGGCATTTCGATGTGATAATAGTTTTATCATGCAAGGAAAAGATATAAATTATAGCATAGACAAAGGATACAATTCTTTGAGGATTAACAAAAAGAATTCCCTCAATGAGAGTGCATTTGCAACTGCCGAGGAGAAAGCTTCTAAACACAATTCTTATACTCCTTGCAGTCAAATTTGTGGGAATAATGGCAGTTTTGTTGGCGATTACCCGCTGCTCTCACTACTGAATTTATGTTCTTTGGCTGAGTGCCAAGGTTACATTTACTTTCTGGCAAAGGATCAGAACGGATGTCGATTCCTACAAAGGATGGTTGATAAGGGAAACTCTAAGGAGATGCATATAGTATTTGAGGGAATCATAGATAATGTTGTTGAGCTCATGATGGATCCTTTTGGTAACTATCTTGTGCAGAAGTTGCTGGATGTGTGCAGAGAAGAACAGAAATTGCAGATTGTTTCCATGGTGACTAAAGAACCAGGGCAGCTCCTCAGAATATCTTTAAACACGCATGGCACACGGGTCATACAGAAGTTGATTGAGACACTCAACTCTAGGAAACAGATTTCATTAGTGAAGTCAGCCCTTCAAGCAGGTTTTCTTGATCTTATTAAGGATCTGAATGGAAATCATGTGATACAACGTTGCTTGAAATGCCTTAGCTGTCAAGATAATGAGTTTATTTTTTATGCTGCCGCAAAGTTTTGTGTTGACATAGCTACTCATCGACATGGATGTTGTGTATTGCAACGTTGCATTGATCATTCAATCGGCAAATATCGAGATAAGCTGGTCACAGAAATATGTAGACATGGGCTTCTCCTAGCTCAAGATCCTTTCGGAAATTATGTTGTTCAGTATATAATCGAGATGGAGATCCCAACTGCCTCAACCAAGCTGACTTCTCAGTTCAAAGGGAACTATGTAAATCTGTCCACGCAAAAATTTAGCAGTCATGTGGTTGAAAAATGCCTTAAGCATGTTCCAGATAGCAGATCAAGGATCGTCCGAGAAATGCTGTCTCCACCTCACTTCGAGCAGCTGTTGCAAGATCCATATGCCAATTATGTCATTCAGTCTGCTCTAACATTGACAAAGGGTTCACTTCATACATCTTTGGTTGAAGCAGTTCGTCCTTACAAAATCTTGCGCACTAGCCCGTATTGCAAGAGGATTTTCTCGGGAAATCTACTCAAGAAAACTTTGGCAATTAAAGCCTCTCATAGGATTGACTATCCGAAAGTTGCAAAGGCAAGCTTGGTTACCAGATATGCTTCTGTATGGTGCTGA 2298 0.4195 MFKTSEKNMSNAENSMERDEVLGTWWNGFPNTSYPNLHHCQRYNEHLAINSPVWRVSHTSHSPPLTSFADGLHVSPHSSSYSAPFQDSKHLTPHDHHSTKLLLDPDSSDFQIGKNIMDNQVVDLDLSRDFYRMNIIDGQGNGNKTKATEADSYGFGLDAFSFDINIPGVNETRSSYGDFCNEVPAPNYECVSSSTWGVSPSMVADMKWANHASEKGYTPSLAHGQSSALNLCSGWNMNQTYPQMEHSKKQGSSSYDGEIQLQKPSIINPFLCDGLNSSKLCGVDYDRSRSVENPLRFSQIMHPKLASLQDTNEKTRGIANFELPEFLSSRRAGGNPMAFRCDNSFIMQGKDINYSIDKGYNSLRINKKNSLNESAFATAEEKASKHNSYTPCSQICGNNGSFVGDYPLLSLLNLCSLAECQGYIYFLAKDQNGCRFLQRMVDKGNSKEMHIVFEGIIDNVVELMMDPFGNYLVQKLLDVCREEQKLQIVSMVTKEPGQLLRISLNTHGTRVIQKLIETLNSRKQISLVKSALQAGFLDLIKDLNGNHVIQRCLKCLSCQDNEFIFYAAAKFCVDIATHRHGCCVLQRCIDHSIGKYRDKLVTEICRHGLLLAQDPFGNYVVQYIIEMEIPTASTKLTSQFKGNYVNLSTQKFSSHVVEKCLKHVPDSRSRIVREMLSPPHFEQLLQDPYANYVIQSALTLTKGSLHTSLVEAVRPYKILRTSPYCKRIFSGNLLKKTLAIKASHRIDYPKVAKASLVTRYASVWC 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g0360 765 ProSiteProfiles Pumilio RNA-binding repeat profile. 531 566 IPR001313 GO:0003723
Lele26g0360 765 PANTHER RNA BINDING PROTEIN PUMILIO-RELATED 221 729 - -
Lele26g0360 765 SMART pum_5 494 529 IPR001313 GO:0003723
Lele26g0360 765 SMART pum_5 639 673 IPR001313 GO:0003723
Lele26g0360 765 SMART pum_5 419 454 IPR001313 GO:0003723
Lele26g0360 765 SMART pum_5 603 638 IPR001313 GO:0003723
Lele26g0360 765 SMART pum_5 531 566 IPR001313 GO:0003723
Lele26g0360 765 SMART pum_5 676 711 IPR001313 GO:0003723
Lele26g0360 765 SMART pum_5 455 490 IPR001313 GO:0003723
Lele26g0360 765 SMART pum_5 567 602 IPR001313 GO:0003723
Lele26g0360 765 ProSiteProfiles Pumilio RNA-binding repeat profile. 491 529 IPR001313 GO:0003723
Lele26g0360 765 SUPERFAMILY ARM repeat 417 729 IPR016024 -
Lele26g0360 765 ProSiteProfiles Pumilio RNA-binding repeat profile. 639 677 IPR001313 GO:0003723
Lele26g0360 765 ProSiteProfiles Pumilio RNA-binding repeat profile. 603 638 IPR001313 GO:0003723
Lele26g0360 765 ProSiteProfiles Pumilio homology domain (PUM-HD) profile. 391 736 IPR033133 GO:0003723
Lele26g0360 765 Gene3D - 412 736 IPR011989 -
Lele26g0360 765 Pfam Pumilio-family RNA binding repeat 643 675 IPR001313 GO:0003723
Lele26g0360 765 Pfam Pumilio-family RNA binding repeat 499 522 IPR001313 GO:0003723
Lele26g0360 765 Pfam Pumilio-family RNA binding repeat 572 605 IPR001313 GO:0003723
Lele26g0360 765 Pfam Pumilio-family RNA binding repeat 680 698 IPR001313 GO:0003723
Lele26g0360 765 Pfam Pumilio-family RNA binding repeat 536 565 IPR001313 GO:0003723
Lele26g0360 765 Pfam Pumilio-family RNA binding repeat 424 457 IPR001313 GO:0003723
Lele26g0360 765 Pfam Pumilio-family RNA binding repeat 610 626 IPR001313 GO:0003723
Lele26g0360 765 Pfam Pumilio-family RNA binding repeat 459 491 IPR001313 GO:0003723
Lele26g0360 765 ProSiteProfiles Pumilio RNA-binding repeat profile. 455 490 IPR001313 GO:0003723
Lele26g0360 765 ProSiteProfiles Pumilio RNA-binding repeat profile. 567 602 IPR001313 GO:0003723
Lele26g0360 765 CDD Pumilio 420 730 IPR033712 GO:0003723
Lele26g0360 765 FunFam Pumilio homolog 9 410 737 - -
Lele26g0360 765 ProSiteProfiles Pumilio RNA-binding repeat profile. 416 454 IPR001313 GO:0003723
Lele26g0360 765 MobiDBLite consensus disorder prediction 79 98 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g0360 Lele-ChrLele26 2171766 2176224 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0374 01 2170894 2175718 Lele26g0360 26 2171766 2176224 CCT
Lele02g0369 02 2143236 2150210 Lele26g0360 26 2171766 2176224 CCT
Lele03g0380 03 2192833 2203776 Lele26g0360 26 2171766 2176224 CCT
Lele04g0377 04 2228733 2239314 Lele26g0360 26 2171766 2176224 CCT
Lele26g0360 26 2171766 2176224 Lele27g1739 27 22646434 22651326 hybridization
Lele26g0360 26 2171766 2176224 Lele28g0358 28 2192375 2196859 hybridization