Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g0355 ATGGCGGGGAAGGTCAAAACCGTGGTGGAGAATGATCTGGGCTGTGGTTTTGTGGGGAGGCTATCCCTTCTTAGAAGCCACCTGTTGAGAAAATCATCCGTCCATTCACTATCCTTGAAATCTGCCGACAATGTACAGAGCAAGGAGAGCAAAAAGGATTCCAAAAAGCCTCCAAATCATGAATCCAAGGGCGCGCCAAATATCACCATCGAGTCTCACAAACCAGATTCGGATCAGAAGACGCCCAGAAAGAGCACCTCCGGTCATCAGAACAGTCAGAACCAGAGACCTTCCGATGCTGCCAGAAGCTCAACATCATCCTCTGGTAATTCAACCAATACAAGGAATGACGAGAACAAATTACCGAGGGAGCCCGTTGGAAATTCTCTGGAGCTTGCTAGGATAAGCACTAGTCACCAGCGAGACAACGAGAATAAAGCCACAGTTAACTTGAAACTTACTGGGAATTTGCGTGCAAGTAACAGCCCCAGAACTAGTATTTCAAAGAAAGTGGAATCCGTTCCCAAGAGTAAAAAGTTGAATTCTGTGACTAATTCTCACAATAACGCCGGGATGGGGAACATCATGAGGAAGAACAGCGATGAACTTGTGCAACTGCGGAGACAGAGGATCCGAGGAGACCCTGAGGTGTTGAAGAACGAGGGAAACGAAGCCTACAAACAGGGAAAATTCGAAGAAGCTTTGAGTCTGTATGACCGAGCCATTCATATTAATTCAAATAAGGCGACTTATTATTGCAATAAGAGTGCAGCTCTAATGGGCTTAGACCGACTTCCAGAAGCATTGGTCGAATGCCAGGAAGCTATTCGCCAGGAACCTTCTTATATAAGAGCTCACCACCGTTTGGCAGCGATTTATCTCAGACTGGGAGAAGCAGATAAGGCGATGCACTGCAGCAATTCAACTCCATATTCGGATTCTATACTTTCATTCCAAGCTCAGGCTCTTCAAAATCACCTTAAAAAATGCCTTGAAGCTCGGGAAGTGAATGAGTGGAACACTATACTGAAGGAAACACAAGCTGCGATATCATTATGTGCTGATTCAGCTCCCCAAGTCTATGCTCTACGAACAGAAGCCTTACTGAAGCTCATGAAACATGAAGAGGCATCTTCTACCTACGAAAAGATGCCCAAATTTGAACTTGATTGGTGTACTAAGATTTTTGGCTTGCCGCTTACTGCATACTTGTTGGTAGTAGGCGCTCAAGTTCACTTGGCAGCCGGCAGGTTCGACGATGCAGTGACATCTGCTCAGCAAGCAGCTGAACTTGATCCAACCAACAAAGAGGTGAACGCAGTGATAAGAAGGACGAGAGCAGTGAGATCAGCGAGAATGAGTGGGAATTTACTGTTCAAGGCTTCCAAGTTTATGGAAGCATGTGGGGTTTACAATGAAGGGCTAGAACATGATCCATTCAACTCAGTGCTGCTATGCAACAGAGCAGCATGCCGTTCTAAGCTGGGTCAATGCGAGAAAGCAATTGAAGATTGTAACGCAGCCCTTTCAATTCAGCCTTATTACAGCAAGGCAAGGTTACGGAGGGCAGATTGCAATGCTAAGTTGGAAAGATGGGGAGCTGCCATTCAAGACTACGAAATGCTGATGAGAGAAAAGCCAGGGGATGAGGAGGTGGCGAGGGCTTTGTTTGAGGCCCAACTTCAACTCAAGATGCTGCGAGGAGAAGATATTAAAGATTTGAAATTCGGTTCCAATTTGGTTTCCATCTCAAGCAATGATCGCTTTAGACACTATGTGACCTTGCCTGGTATGTCCGTTGTTCTGTTTTGCAACAAGGCAACCCACAAGCAAGTATTGCAGGTGTTGGAGCAAACATGCAAGAGATTTCCATCTGTTCATTTCCTCAAGGTGGAGATTGAAGATCATCCCTACTTGGCAAAATCAGAAGGCGTGAGCTCTGTCCCAGCCTTCAGAATATACAAGAACGGATCAAGGGTCAAAGAGATTCCAGGCAACAAACACGAGTTGTTAGAAAGATCGGTTAAACTGTATACTAGCTGA 2043 0.4562 MAGKVKTVVENDLGCGFVGRLSLLRSHLLRKSSVHSLSLKSADNVQSKESKKDSKKPPNHESKGAPNITIESHKPDSDQKTPRKSTSGHQNSQNQRPSDAARSSTSSSGNSTNTRNDENKLPREPVGNSLELARISTSHQRDNENKATVNLKLTGNLRASNSPRTSISKKVESVPKSKKLNSVTNSHNNAGMGNIMRKNSDELVQLRRQRIRGDPEVLKNEGNEAYKQGKFEEALSLYDRAIHINSNKATYYCNKSAALMGLDRLPEALVECQEAIRQEPSYIRAHHRLAAIYLRLGEADKAMHCSNSTPYSDSILSFQAQALQNHLKKCLEAREVNEWNTILKETQAAISLCADSAPQVYALRTEALLKLMKHEEASSTYEKMPKFELDWCTKIFGLPLTAYLLVVGAQVHLAAGRFDDAVTSAQQAAELDPTNKEVNAVIRRTRAVRSARMSGNLLFKASKFMEACGVYNEGLEHDPFNSVLLCNRAACRSKLGQCEKAIEDCNAALSIQPYYSKARLRRADCNAKLERWGAAIQDYEMLMREKPGDEEVARALFEAQLQLKMLRGEDIKDLKFGSNLVSISSNDRFRHYVTLPGMSVVLFCNKATHKQVLQVLEQTCKRFPSVHFLKVEIEDHPYLAKSEGVSSVPAFRIYKNGSRVKEIPGNKHELLERSVKLYTS 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g0355 680 Pfam Tetratricopeptide repeat 216 247 IPR001440 GO:0005515
Lele26g0355 680 MobiDBLite consensus disorder prediction 177 194 - -
Lele26g0355 680 Gene3D Tetratricopeptide repeat domain 214 567 IPR011990 GO:0005515
Lele26g0355 680 Gene3D Glutaredoxin 577 679 - -
Lele26g0355 680 Pfam Tetratricopeptide repeat 409 481 - -
Lele26g0355 680 Pfam Tetratricopeptide repeat 494 549 - -
Lele26g0355 680 ProSiteProfiles TPR repeat profile. 402 435 IPR019734 GO:0005515
Lele26g0355 680 PANTHER TPR REPEAT-CONTAINING THIOREDOXIN 30 676 IPR044534 -
Lele26g0355 680 Pfam Thioredoxin 610 671 IPR013766 -
Lele26g0355 680 ProSiteProfiles TPR repeat profile. 215 248 IPR019734 GO:0005515
Lele26g0355 680 MobiDBLite consensus disorder prediction 35 194 - -
Lele26g0355 680 SUPERFAMILY Thioredoxin-like 566 670 IPR036249 -
Lele26g0355 680 SUPERFAMILY TPR-like 452 564 IPR011990 GO:0005515
Lele26g0355 680 MobiDBLite consensus disorder prediction 45 60 - -
Lele26g0355 680 MobiDBLite consensus disorder prediction 131 170 - -
Lele26g0355 680 CDD TRX_family 589 672 - -
Lele26g0355 680 SUPERFAMILY TPR-like 214 437 IPR011990 GO:0005515
Lele26g0355 680 SMART tpr_5 215 248 IPR019734 GO:0005515
Lele26g0355 680 SMART tpr_5 249 282 IPR019734 GO:0005515
Lele26g0355 680 SMART tpr_5 516 549 IPR019734 GO:0005515
Lele26g0355 680 SMART tpr_5 402 435 IPR019734 GO:0005515
Lele26g0355 680 SMART tpr_5 482 515 IPR019734 GO:0005515
Lele26g0355 680 SMART tpr_5 448 481 IPR019734 GO:0005515
Lele26g0355 680 MobiDBLite consensus disorder prediction 84 116 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g0355 Lele-ChrLele26 2147070 2149598 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g0355 26 2147070 2149598 Lele27g1744 27 22677166 22679679 hybridization
Lele26g0355 26 2147070 2149598 Lele28g0354 28 2167748 2172513 hybridization