Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g0353 ATGACGACCCAGAATGTGATGGCCCCTGATTTTAAATCACAGATTAACGCCGTTATTGCGGTGTTGATGTCGATTTCCAATTCACCTGCGTTGCCCGGAGCAGGAGTCCCTGAATCCATGGCTCTGCTTCGTGAGTTTCTGGGCACATCCCAGAGAAAGCTCATGAAGAGGCTTAAGGACGGAGGAGGCAAAGGAGGAGCTAAGGTTACCTCTTGGGTTGATTCAATGAGAGCTTCCTCTCCACCCCGTGTCAAATCCACAGTTCGTGCTTGTGAAAACTCTGCCATTAGTTCTGAGATTCTTCGTCATCCTTCAGCGCTCAACGTGTTTGATCAGATAATATATAAAGCAAAAGGAAAAAAGATCATAACCTTTCTTGACTACGATGGAACTCTCTCCCCGATTGTTGCAGACCCTGAGAAAGCATTCATGAGTGACAAGATGAGAGAAACGGTGAAGGACATAGCCATACATTTTCCCACAGCCATCGTGACTGGGAGGGGCATAGACAAGGTATATAACTTTGTAAGACTGGCAGAACTGTACTACGCAGGAAGCCATGGCATGGACATCAAGGGGCCAACGAAAACACGAAACTCTGAGAAGGGTAAACGAGCAGTCCTCTTCCAACCTGCGAATCAGTTCTTGCCCATGATAGACGAGGTGTATAAAATCTTGGTAGAAAAAACAAAGTCTGTTCCCGGGGCCATGGTAGAGAATAACAAGTTTTGCTTGTCCGTTCACTTCCGCTGTGTTGACGAGAAGAGTTGGGGTGCATTGGCAGAGCAAGTAAGATCAGTGCTCAACGATTATCCAAGACTTAGACTTACCCAAGGAAGGAAAGTTTTAGAGATCCGTCCAAACATCAAGTGGGACAAGGGCAAAGCTCTCGACTTTTTGTTGCGGTCACTCGGATATGGAAATTCTAAAGACGTGTTCCCGATTTATATCGGTGATGACCGAACTGACGAGGATGCTTTTAAGGTTTTACGCAACAGAGGTCAGGGGATTGGGATTTTGGTTTCTAAAGTTCCAAGAGAAACAGAGGCTTCCTACACTCTGCAAGATCCATCAGAAGTTGAGCAGTTTCTACGGGGTTTGGTGGAGTGGAAGAGAAGGAGGATGAATCCAACAACTAGCGTAGAGACCTGTAGATTGTAG 1161 0.4625 MTTQNVMAPDFKSQINAVIAVLMSISNSPALPGAGVPESMALLREFLGTSQRKLMKRLKDGGGKGGAKVTSWVDSMRASSPPRVKSTVRACENSAISSEILRHPSALNVFDQIIYKAKGKKIITFLDYDGTLSPIVADPEKAFMSDKMRETVKDIAIHFPTAIVTGRGIDKVYNFVRLAELYYAGSHGMDIKGPTKTRNSEKGKRAVLFQPANQFLPMIDEVYKILVEKTKSVPGAMVENNKFCLSVHFRCVDEKSWGALAEQVRSVLNDYPRLRLTQGRKVLEIRPNIKWDKGKALDFLLRSLGYGNSKDVFPIYIGDDRTDEDAFKVLRNRGQGIGILVSKVPRETEASYTLQDPSEVEQFLRGLVEWKRRRMNPTTSVETCRL 386
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g0353 386 Pfam Trehalose-phosphatase 125 358 IPR003337 GO:0003824|GO:0005992
Lele26g0353 386 FunFam Trehalose 6-phosphate phosphatase 212 288 - -
Lele26g0353 386 Gene3D - 125 354 IPR023214 -
Lele26g0353 386 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 125 332 IPR006379 -
Lele26g0353 386 Gene3D - 212 288 - -
Lele26g0353 386 CDD HAD_TPP 125 360 - -
Lele26g0353 386 FunFam Trehalose 6-phosphate phosphatase 218 377 - -
Lele26g0353 386 SUPERFAMILY HAD-like 125 370 IPR036412 -
Lele26g0353 386 TIGRFAM T6PP: trehalose-phosphatase 120 368 IPR003337 GO:0003824|GO:0005992
Lele26g0353 386 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 57 376 IPR044651 GO:0004805|GO:0005992
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g0353 Lele-ChrLele26 2124665 2126556 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g0353 114 367 Trehalose Biosynthesis Gene Families AT1G70290 27.778 6.92e-12 65.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0368 01 2127940 2140654 Lele26g0353 26 2124665 2126556 CCT
Lele02g0362 02 2098539 2111002 Lele26g0353 26 2124665 2126556 CCT
Lele03g0374 03 2143212 2155455 Lele26g0353 26 2124665 2126556 CCT
Lele04g0370 04 2182864 2195329 Lele26g0353 26 2124665 2126556 CCT
Lele26g0353 26 2124665 2126556 Lele27g1747 27 22700034 22701896 hybridization
Lele26g0353 26 2124665 2126556 Lele28g0352 28 2143541 2145360 hybridization