LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele26g0353	ATGACGACCCAGAATGTGATGGCCCCTGATTTTAAATCACAGATTAACGCCGTTATTGCGGTGTTGATGTCGATTTCCAATTCACCTGCGTTGCCCGGAGCAGGAGTCCCTGAATCCATGGCTCTGCTTCGTGAGTTTCTGGGCACATCCCAGAGAAAGCTCATGAAGAGGCTTAAGGACGGAGGAGGCAAAGGAGGAGCTAAGGTTACCTCTTGGGTTGATTCAATGAGAGCTTCCTCTCCACCCCGTGTCAAATCCACAGTTCGTGCTTGTGAAAACTCTGCCATTAGTTCTGAGATTCTTCGTCATCCTTCAGCGCTCAACGTGTTTGATCAGATAATATATAAAGCAAAAGGAAAAAAGATCATAACCTTTCTTGACTACGATGGAACTCTCTCCCCGATTGTTGCAGACCCTGAGAAAGCATTCATGAGTGACAAGATGAGAGAAACGGTGAAGGACATAGCCATACATTTTCCCACAGCCATCGTGACTGGGAGGGGCATAGACAAGGTATATAACTTTGTAAGACTGGCAGAACTGTACTACGCAGGAAGCCATGGCATGGACATCAAGGGGCCAACGAAAACACGAAACTCTGAGAAGGGTAAACGAGCAGTCCTCTTCCAACCTGCGAATCAGTTCTTGCCCATGATAGACGAGGTGTATAAAATCTTGGTAGAAAAAACAAAGTCTGTTCCCGGGGCCATGGTAGAGAATAACAAGTTTTGCTTGTCCGTTCACTTCCGCTGTGTTGACGAGAAGAGTTGGGGTGCATTGGCAGAGCAAGTAAGATCAGTGCTCAACGATTATCCAAGACTTAGACTTACCCAAGGAAGGAAAGTTTTAGAGATCCGTCCAAACATCAAGTGGGACAAGGGCAAAGCTCTCGACTTTTTGTTGCGGTCACTCGGATATGGAAATTCTAAAGACGTGTTCCCGATTTATATCGGTGATGACCGAACTGACGAGGATGCTTTTAAGGTTTTACGCAACAGAGGTCAGGGGATTGGGATTTTGGTTTCTAAAGTTCCAAGAGAAACAGAGGCTTCCTACACTCTGCAAGATCCATCAGAAGTTGAGCAGTTTCTACGGGGTTTGGTGGAGTGGAAGAGAAGGAGGATGAATCCAACAACTAGCGTAGAGACCTGTAGATTGTAG	1161	0.4625	MTTQNVMAPDFKSQINAVIAVLMSISNSPALPGAGVPESMALLREFLGTSQRKLMKRLKDGGGKGGAKVTSWVDSMRASSPPRVKSTVRACENSAISSEILRHPSALNVFDQIIYKAKGKKIITFLDYDGTLSPIVADPEKAFMSDKMRETVKDIAIHFPTAIVTGRGIDKVYNFVRLAELYYAGSHGMDIKGPTKTRNSEKGKRAVLFQPANQFLPMIDEVYKILVEKTKSVPGAMVENNKFCLSVHFRCVDEKSWGALAEQVRSVLNDYPRLRLTQGRKVLEIRPNIKWDKGKALDFLLRSLGYGNSKDVFPIYIGDDRTDEDAFKVLRNRGQGIGILVSKVPRETEASYTLQDPSEVEQFLRGLVEWKRRRMNPTTSVETCRL	386

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele26g0353	386	Pfam	Trehalose-phosphatase	125	358	IPR003337	GO:0003824\|GO:0005992
	Lele26g0353	386	FunFam	Trehalose 6-phosphate phosphatase	212	288	-	-
	Lele26g0353	386	Gene3D	-	125	354	IPR023214	-
	Lele26g0353	386	TIGRFAM	HAD-SF-IIB: HAD hydrolase, family IIB	125	332	IPR006379	-
	Lele26g0353	386	Gene3D	-	212	288	-	-
	Lele26g0353	386	CDD	HAD_TPP	125	360	-	-
	Lele26g0353	386	FunFam	Trehalose 6-phosphate phosphatase	218	377	-	-
	Lele26g0353	386	SUPERFAMILY	HAD-like	125	370	IPR036412	-
	Lele26g0353	386	TIGRFAM	T6PP: trehalose-phosphatase	120	368	IPR003337	GO:0003824\|GO:0005992
	Lele26g0353	386	PANTHER	TREHALOSE 6-PHOSPHATE PHOSPHATASE	57	376	IPR044651	GO:0004805\|GO:0005992

Showing 1 to 10 of 10 entries

Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele26g0353	Lele-ChrLele26	2124665	2126556	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele26g0353	114	367	Trehalose Biosynthesis Gene Families	AT1G70290	27.778	6.92e-12	65.1

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele01g0368	01	2127940	2140654	Lele26g0353	26	2124665	2126556	CCT
	Lele02g0362	02	2098539	2111002	Lele26g0353	26	2124665	2126556	CCT
	Lele03g0374	03	2143212	2155455	Lele26g0353	26	2124665	2126556	CCT
	Lele04g0370	04	2182864	2195329	Lele26g0353	26	2124665	2126556	CCT
	Lele26g0353	26	2124665	2126556	Lele27g1747	27	22700034	22701896	hybridization
	Lele26g0353	26	2124665	2126556	Lele28g0352	28	2143541	2145360	hybridization

Showing 1 to 6 of 6 entries