LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele26g0319	ATGGACCCGAATAAAGTCCGAAGAAAACCCCGGCTCGATCGCAGCAATGCTGTCAAGTGCGCTGAGTATGATGCTGGGTCGTCTTCCTCGTCTCTAGACAACTCGAGTGGATCCCTCTACACTCGATCCACGGAGTTCTGTGATCGAACCAGCTTCCGAATTGCGGGGGTTGAGGGTGAGGTTGATCGCATATGCAGAGGTTTGGGGCTTTCAGGACCTGAAGACTTCTCCATCCCGGCTGCGGAGTGGGAGGCTATGAAAATTATATCGTCTTCGGATATTACACCAAGTTCGAAGATGAACGAGTTAGAAGGTCAGGAGAATGAGGAATTACAAGACGAGAGTCCAGTAGTGGGGGACTTAGGTTACGGAGTCGAAGAAAGGATTACAGTTAGATGTCTAGCTGAGTCAACGCAAGATGAGCCTGCTGAGACTAGTGGGTGCTGCATTGCTGGTGCTGGTGTTTGCGGAATCAGTGTTGGAGTAGGTATTAAAGGAATCCGTCCACCGATGCTAAAGTCCCCGCCTGGGCCGTGGCATCCAGTTATTGGTAACACTTGCTCTACTTGGGACATTTTAAAGGATTTAGCTCCGCAAGTCGAAAGGCAATCTTCAGGAAATTACGGGGAGTTGAACTCTTTCGATGCTAACGAAGAAATACGTAGGGAAGCAGAGCAAGGAGAAGTAAATAAAGAGGAAAAAGAAGAACCGGTAGTGGAAGGCAAGGTAAGTCCGAGAGGAGAAGAGGACGTTAATGCAACAAGGATTGCGGAGATCGTTTCTCAGTTTTCAGCCTCGTGTTCGTTTACTACGTCAAACGAAGACGATTATTCTAGCACTTTCACGGATCCTCCATCGAATAATATATCTCCCAACGAAAGATTCAGGCGCAGAATTACGAACTGGGAAAAGGGTGAGCTTTTGGGACGTGGTTCGTTTGGGTCAGTCTATGAAGGAATTTCTGAAGATGGATTCTTTTTTGCTGTAAAGGAAGTTTCACTACTTGATCAAGATGACCAGGGAAGGCAAAGTGTCTATTGCCTGGAGCAGGAAATTGCTCTTTTGAGTCAGTTTGAACATGAGAATATAGTTCAATACTATGGCACAGAAATGGATCAATCAAAGCTGTACATTTTTCTTGAGCTTGTGACTAAAGGTTCCCTTGCAAATCTTTATCGGCGGTACAATCTCCGAGACTCCCAAGTATCTGCCTACACAAGACAGATTCTGCACGGTTTAAAGTATCTTCATGATCAAAATGTGATTCACAGGGATATTAAATGTGCAAATATACTGGTAGATGCAAATGGATCTGTCAAGCTTTCAGATTTTGGATTGGCAAAGTCAACCAAACTGAATGATATTAAGTCGTGCAAGGGGACACCATTCTGGATGGCACCTGAGGTTGTGAAAGGAAAGAATCAAGGTTATGGACTTCCAGCTGATATATGGAGTCTGGGATGCACTGTGCTTGAGATGTTAACGGGCCAAATTCCATACTCTCATTTGGAATGTATGCAGGCTTTGTTTAGAATTGGAAAGGTGTCTTCAAGTCAATCCTGA	1563	0.4504	MDPNKVRRKPRLDRSNAVKCAEYDAGSSSSSLDNSSGSLYTRSTEFCDRTSFRIAGVEGEVDRICRGLGLSGPEDFSIPAAEWEAMKIISSSDITPSSKMNELEGQENEELQDESPVVGDLGYGVEERITVRCLAESTQDEPAETSGCCIAGAGVCGISVGVGIKGIRPPMLKSPPGPWHPVIGNTCSTWDILKDLAPQVERQSSGNYGELNSFDANEEIRREAEQGEVNKEEKEEPVVEGKVSPRGEEDVNATRIAEIVSQFSASCSFTTSNEDDYSSTFTDPPSNNISPNERFRRRITNWEKGELLGRGSFGSVYEGISEDGFFFAVKEVSLLDQDDQGRQSVYCLEQEIALLSQFEHENIVQYYGTEMDQSKLYIFLELVTKGSLANLYRRYNLRDSQVSAYTRQILHGLKYLHDQNVIHRDIKCANILVDANGSVKLSDFGLAKSTKLNDIKSCKGTPFWMAPEVVKGKNQGYGLPADIWSLGCTVLEMLTGQIPYSHLECMQALFRIGKVSSSQS	520

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lele26g0319	520	MobiDBLite	consensus disorder prediction	22	37	-	-
Lele26g0319	520	Gene3D	Transferase(Phosphotransferase) domain 1	299	520	-	-
Lele26g0319	520	SMART	serkin_6	302	520	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Lele26g0319	520	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	421	433	IPR008271	GO:0004672\|GO:0006468
Lele26g0319	520	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	145	514	-	-
Lele26g0319	520	MobiDBLite	consensus disorder prediction	224	249	-	-
Lele26g0319	520	ProSitePatterns	Protein kinases ATP-binding region signature.	308	330	IPR017441	GO:0005524
Lele26g0319	520	MobiDBLite	consensus disorder prediction	1	18	-	-
Lele26g0319	520	MobiDBLite	consensus disorder prediction	95	114	-	-
Lele26g0319	520	FunFam	Mitogen-activated protein kinase 1, putative, expressed	300	519	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele26g0319	Lele-ChrLele26	1906138	1916298	Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele26g0319	11	514	MAP Kinase Kinase Kinase	AT4G08500	48.263	8.18e-137	407

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Lele26g0319		Pkinase	3.2e-60	CL0016

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Event-related genes

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Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
Lele26g0319	26	1906138	1916298	Lele01g0361	01	2093193	2096854	CCT
Lele26g0319	26	1906138	1916298	Lele02g0354	02	2048478	2052118	CCT
Lele26g0319	26	1906138	1916298	Lele03g0366	03	2105659	2109345	CCT
Lele26g0319	26	1906138	1916298	Lele04g0361	04	2143867	2147477	CCT
Lele26g0319	26	1906138	1916298	Lele28g0320	28	1930775	1939915	hybridization

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