Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g0307 ATGTCTAACACGACAAGATGCACAGGCACCGTCAGGTGGTTCAATGCCTACAAGGGTTTCGGATTCATCGCCCCCGATGACGGTGGCGATGATCTCTTTGTCCATCACACTTCCATCCTATCCCACGGTTATCGCACCCTGTCGGAGGGTCAGCCCGTCGAGTTCCTTCTCGATTACGCCCAAGATGGACGAACCAAAGCTGTTGACGTCACCTCTTTCCTGAGATCTCGTCCTTCCGATGCCACTGGAAGAGGGTCTTATAGCGGCAGGGGCAGAGTGGGTGGATATGGCGAACGCTATGCTGGCGGGAATACTCGCGATGATCCTTACCGGTATGGTTTGGGAGGCGGCATTGGGCGAGAGGTGGAGGCTACGGCGGTGGTGGCAGGTACAGCGAGGGCCCCGAGTGCTACAATTGTGGCCGCGTGGGTCATTTGGCAAGAGACTGTTATCAGGGTGCTGGGGGTGGCACTCGCAGACGCGGTGGTGGTGGTAGTGGCCGCGGAGGCGGAGGCGAAGGCGGGGCGCGCTTTCATTGTGGGGAGGAAGGGCATTTTGCTAGGGAATGTCCCAACATCGATAAATGAAAATGTTGGGTATTTTCCCCTTCTGTACTGTGGCCATATTTATAATTATAATTTACGTATATCAAGTTCCGAGGATTGTGGCATTTGCACTTTGTGGATGGGTGAAGCTCGGTGGAGAAGAAGATGGGTCAGGTGTATTCTTTTCTGGGCAGATGTTTCTGGTTATTGGCATGTTGCTGAAACTTGTTCTGTAGGATTCGGTAGTTGTTAA 798 0.5338 MSNTTRCTGTVRWFNAYKGFGFIAPDDGGDDLFVHHTSILSHGYRTLSEGQPVEFLLDYAQDGRTKAVDVTSFLRSRPSDATGRGSYSGRGRVGGYGERYAGGNTRDDPYRYGLGGGIGREVEATAVVAGTARAPSATIVAAWVIWQETVIRVLGVALADAVVVVVAAEAEAKAGRAFIVGRKGILLGNVPTSINENVGYFPLLYCGHIYNYNLRISSSEDCGICTLWMGEARWRRRWVRCILFWADVSGYWHVAETCSVGFGSC 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g0307 265 SMART csp_8 8 73 IPR011129 GO:0003676
Lele26g0307 265 ProSiteProfiles Cold-shock (CSD) domain profile. 6 72 IPR002059 GO:0003676
Lele26g0307 265 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 120 - -
Lele26g0307 265 PRINTS Cold shock protein signature 30 39 IPR002059 GO:0003676
Lele26g0307 265 PRINTS Cold shock protein signature 45 63 IPR002059 GO:0003676
Lele26g0307 265 PRINTS Cold shock protein signature 9 24 IPR002059 GO:0003676
Lele26g0307 265 CDD CSP_CDS 7 71 IPR002059 GO:0003676
Lele26g0307 265 Pfam 'Cold-shock' DNA-binding domain 7 72 IPR002059 GO:0003676
Lele26g0307 265 Gene3D - 1 71 IPR012340 -
Lele26g0307 265 SUPERFAMILY Nucleic acid-binding proteins 2 71 IPR012340 -
Lele26g0307 265 ProSitePatterns Cold-shock (CSD) domain signature. 20 39 IPR019844 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g0307 Lele-ChrLele26 1814429 1815226 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Lele26g0307 CSD 5.2e-21 CL0021