Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g0285 ATGCCGTCGGACGGAGGAGGAGGAGATGGTGGCTTGGACGAAGATGGAGCTTCTCAATCTCCTGCCCATGACGGTGAAGAAGCTAGACGTCGGGAAGTTGAACCGGCCCCTGGCGTTGATGTAGAAGGGCTTGAGGTTGCTAGGGAGTGTTTGACAGAGGCGTTTAAGCTTAACACATCTCCGACAGATGTTCATGCAAAATCTGTTTCTTTGGTCGACATATTCAAGTCCCTTGAATCAGGCAAGCAATGTGAAGCTAGTCATTCAGATGTTTGTAAACAACCAGATGACATGGATGCATCGGGTTCATTCCCTGCCCACAATACTGATCATACACACAAACATTCCAAGGCACGGAAATCTCCGGAGTTTCCAAAGATGAGCTGTGTGGGCAATTCTTTAATGCTCTGGAGAAAGTCCACTTCTTTAGGACAAATCCTGATGGATGACCCAGTCCAACTGGAGAAAGCATCTTGTATATTTAATGATGCTGTAATGGAGATGGAAAGATCTGAGTGTCAGGAGTTTAGTCTAAAGAACTTGGCTGAATTGCTGAAATCACAAGGCAAAAAGGCAATGCGATCCAAGAAATACCCTGATGCAATTGATTTCTATAATTGTGCAATTGCACTTTGCGAAGAGAATGCTGTTTACTACTGCCACTGGGCCGCTGCTTACACTCAGATCAACAAATATACAGAATCAATCCAAGACACTTTTAAATCTATTGAGATTGACCCGAACTATAGCAAGGCATACAGTCGACTGGGTTTAGCATATTATGCTCAGGGAAATTACAGAGGTGCCATTGAGTTAGGAAAGGTTGCCTTGCTTTTGGATCCGAGTAATGAGTCGATTAAAGAAAATACACGGGTTGCTGAGCAAAAATTGATAGAAGAGCAACACCGTGCAGAGCACAGTCAGAATTCAAGATCATTTCAGGAGTCTCAGAACCAGTCCGCACGAGGGTCAAGAGGAAATGCAGCTCCACCGCCATTCAACTCAATGCCATTTAATGCCATCGATCTTGCAAGCATGTTTATGAACAGAGCCGCAAACACTGCCAATGCTTATTAG 1077 0.4448 MPSDGGGGDGGLDEDGASQSPAHDGEEARRREVEPAPGVDVEGLEVARECLTEAFKLNTSPTDVHAKSVSLVDIFKSLESGKQCEASHSDVCKQPDDMDASGSFPAHNTDHTHKHSKARKSPEFPKMSCVGNSLMLWRKSTSLGQILMDDPVQLEKASCIFNDAVMEMERSECQEFSLKNLAELLKSQGKKAMRSKKYPDAIDFYNCAIALCEENAVYYCHWAAAYTQINKYTESIQDTFKSIEIDPNYSKAYSRLGLAYYAQGNYRGAIELGKVALLLDPSNESIKENTRVAEQKLIEEQHRAEHSQNSRSFQESQNQSARGSRGNAAPPPFNSMPFNAIDLASMFMNRAANTANAY 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g0285 358 MobiDBLite consensus disorder prediction 301 334 - -
Lele26g0285 358 Gene3D Immunoglobulin FC, subunit C 36 82 - -
Lele26g0285 358 SUPERFAMILY TPR-like 180 296 IPR011990 GO:0005515
Lele26g0285 358 ProSiteProfiles TPR repeat profile. 216 249 IPR019734 GO:0005515
Lele26g0285 358 Pfam TPR repeat 225 264 - -
Lele26g0285 358 MobiDBLite consensus disorder prediction 99 122 - -
Lele26g0285 358 SMART tpr_5 216 249 IPR019734 GO:0005515
Lele26g0285 358 SMART tpr_5 182 215 IPR019734 GO:0005515
Lele26g0285 358 SMART tpr_5 250 283 IPR019734 GO:0005515
Lele26g0285 358 MobiDBLite consensus disorder prediction 310 325 - -
Lele26g0285 358 PANTHER LD24721P 34 349 - -
Lele26g0285 358 ProSiteProfiles TPR repeat profile. 250 283 IPR019734 GO:0005515
Lele26g0285 358 Gene3D Tetratricopeptide repeat domain 177 336 IPR011990 GO:0005515
Lele26g0285 358 ProSiteProfiles TPR repeat region circular profile. 250 283 - -
Lele26g0285 358 MobiDBLite consensus disorder prediction 1 41 - -
Lele26g0285 358 MobiDBLite consensus disorder prediction 19 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g0285 Lele-ChrLele26 1672810 1680860 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g0285 178 281 Glycosyltransferase AT3G04240 33.654 2.28e-06 47.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g0285 26 1672810 1680860 Lele27g1814 27 23106544 23112785 hybridization
Lele26g0285 26 1672810 1680860 Lele28g0293 28 1721767 1734238 hybridization