Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g0178 ATGCAGCTTACGTTAAGCAACTCTCTATCTAACTGCGTTTCACATCATCACAGCACGACTTTCAATATTAAGGACTGCCACTTCCATTTGCCATTGCCTTTCCCTGTCTTTCAACTTACCTGTACATTCCGCTTATTGGCATGCTTATTGAAGCGAAGAGAGCAACCACAGCCTCCTTCTCTAGCAGACGTAGAGTCAGATAGATTAAGTTGCTTACCAGGTCATGTTATAGACCACATTCTGTCACATTTGTCAATTCGGGAAGCAGTGAGGACAAGTGTTCTATCCAGCAAATGGAGGTACAAATGGTCTACTCTACCAAATCTTGTGTTTGATAACCAGTGTCTCCCCATATCTTCCCAAGATTACTCAATTATCAAGAACAAGCTTGTGAGAATTATTGATCATGTGCTTTTGCTTCACTCTGGTGCAATAAACAAGTTCAAGCTCTCCCATCGTGATCTAATTGGTGTGACTGACATTGATCGTTGGACTCTTCATTTAACCAGAAGGTCTATCAAAGAGCTTGTGCTGGAAATCTGGAAAGGGCATCGCTACAAGATACCCTCTTGTTTATTTACTTGCCAAAGTTTAATTCATTTGGAATTATTTAACTGCTGGCTTAAGCCTCCATCAACATTTATAGGCTTCAGGAACTTGAAGAGTCTTGATCTACAGCATGTTACCATGGATCAAGATGTGTTTGAAAACTTGATATCTAACTGCCCACTGCTTGAGCGTCTAACATTGATGAACTTCGATGGCTTCACTTATCTCAACATTGATGCACCGAATCTTCAGTTTTTTGACATTGGAGGCAAATTTGAGGAAGTTAGATTTGAGAACACTTTCCATTTAGCTGTCGTATCCATTGGTTTGTATTTGAACCTTGAAAACGAGAAAAATAGATGGCAAGGAAGTTCTAGCAAATTGCTCAAGTTCTTCGTTCATCTACCTCATGTTAGAAGGTTGGAGGTTCAAAGCTATTTTTTAAGGTATTTGGCAGTAGGGGTTGTGCCACTAAAGCTTCCTAGACCATGCGTAGATTTAACTTATCTTTCCATACGCATCAATTTCAACGATTCCAAGGAAATTTCAGCTGCTTTGTGCCTCTTAAGGAGTTCTCCGAATCTTCAAGAACTAGAAGTGTTGGCTCGCACTGAGGACCAACAGACTACTCTGGGAACACAGGCCTACTGTTGGGAGGATGAGTATTGTAATTGCCCAGTGATGCAACTGCAACTTGTTAGGATAGACGGTATCTCTGGCATCAAACCCGAACTAGATTTCATCAGCTTTCTGCTTTTATATTCTCCCGTTCTAGAACGGATGACTGTGAAACCTACTTCTTCAAATGGAGGATCGGAGTTAATGAAAGAATTATTGCGGTTCAGAAGAGTGTCAGGACGAGCTGAAATTATATACCTGGATCCTTGA 1437 0.4085 MQLTLSNSLSNCVSHHHSTTFNIKDCHFHLPLPFPVFQLTCTFRLLACLLKRREQPQPPSLADVESDRLSCLPGHVIDHILSHLSIREAVRTSVLSSKWRYKWSTLPNLVFDNQCLPISSQDYSIIKNKLVRIIDHVLLLHSGAINKFKLSHRDLIGVTDIDRWTLHLTRRSIKELVLEIWKGHRYKIPSCLFTCQSLIHLELFNCWLKPPSTFIGFRNLKSLDLQHVTMDQDVFENLISNCPLLERLTLMNFDGFTYLNIDAPNLQFFDIGGKFEEVRFENTFHLAVVSIGLYLNLENEKNRWQGSSSKLLKFFVHLPHVRRLEVQSYFLRYLAVGVVPLKLPRPCVDLTYLSIRINFNDSKEISAALCLLRSSPNLQELEVLARTEDQQTTLGTQAYCWEDEYCNCPVMQLQLVRIDGISGIKPELDFISFLLLYSPVLERMTVKPTSSNGGSELMKELLRFRRVSGRAEIIYLDP 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g0178 478 SUPERFAMILY RNI-like 166 382 - -
Lele26g0178 478 Pfam Leucine Rich Repeat 219 243 IPR013101 -
Lele26g0178 478 Pfam F-box domain 69 102 IPR001810 GO:0005515
Lele26g0178 478 ProSiteProfiles F-box domain profile. 66 114 IPR001810 GO:0005515
Lele26g0178 478 SUPERFAMILY F-box domain 67 110 IPR036047 GO:0005515
Lele26g0178 478 Gene3D Ribonuclease Inhibitor 136 412 IPR032675 -
Lele26g0178 478 SMART 9598neu4hmm 407 476 IPR006566 -
Lele26g0178 478 PANTHER F-BOX PROTEIN-LIKE 67 450 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g0178 Lele-ChrLele26 1047336 1052736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g0178 61 286 EF-hand Containing Proteins AT5G41840 25.000 1.47e-13 70.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g0178 26 1047336 1052736 Lele27g1913 27 23698044 23700452 hybridization
Lele26g0178 26 1047336 1052736 Lele28g0181 28 1058358 1062663 hybridization