Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g0177 ATGGGGAATCAACCTGGTAAAGGATTTTGCGGACTGAAAACGAGGATAAGGAGAGAGCCAAAGGGTTTCATTCATCACCAAGCTTCCCAGTCGCACGTAGGGATAAGAACGGTGGATGTTGATGAAGTTAGTAACTTGTCCACCGGTTCAGATCTCTGCATCTCCATAGTGACTTGGAATATGAACGGCCAGGTTACCTTTGAGGATCTAGCAGAGATGGTCGGGGACAACTGTGAGTTTGATCTTCTAGCCATTGGCTTGCAGGAGGCCCCGCGAAACAAAGTTGCAAAGATGCTGAAAGCAGCTCTCGTTGATACTCACATCCTGATAGGTAAAGTTACCATGCAGTCTTTGCAGTTGTACCTGTTCGGGCCCAAGAATGCTGGATCATTAATTAGAGAATTGAAGGTGGACAAACAATCAGTAGGAGGCTGCGGAGGAATAATTGGAAGGAAGAAAGGGGCAGTGGCAATCTGGATTAACTACAAATCCATAAGGATGGTGTTCCTTTCTTGCCATCTCTCAGCTCATGCGCGCAGAGTAGAAGAAAGGAATTCAGAATGCAGGCACATATCACACTCACTCTTCTCCAAGAATTGGAATCCATATGCCAGACCAGCACACGTCACTGTTTGGATGGGGGATCTCAACTACAGGCTACAAGGCATTGATACCTACCCGGCCAGAGCTCTCATCCAAACGGACCTCCACAAGCTGCTTGGCAAAGATCAGCTCTTACAAGAGGCTGGACGAGGACAGATTTTTAATGGGTATTGTGAGGGCACATTGACATTCAGGCCATCTTACAAGTATAATGTCGGAAGTAGCAACTATGATACCAGTTATAAGGTGAGGGTGCCGGCTTGGACAGATCGTATATTGTTCAAGGTAGAGGACGAAGATAAGATGGAAGCAATCTTACACTCGTATGATTCAATGGATGAAATAAACGGTTCTGATCACAAGCCAGTGAAGGCTCGACTGTGCTTAAGACTTCGTCAAACCTCCCCGCTACTTGATGTCTGGTCAGAGAACGAGAATGAAGATATAGATCGTGCTATTGCACTATCTATTGTAGAGGAAAATCAGCCAAGAAAGAACATAAAGGACCGCAAGTCACAATTAGAAGAAGATGAACAACTTGCTAGAGCAATACAAGAAAGTCTAAATGTTGAGTCTCCTCCCAGATATGGAAATGGAAATATGTATCAACCGCAATGCCTGTGTATTTCCCCATGGGGTCCAGATTCAAAGGCATCAACTTTGTATAGAGATCATTTCTCTTTTTATGTAATGTTACATAATCAATTATACATGAGATGCAAACATAATCAAATCTGTTCATTTAGTTATAGGATTTGTGCTGGTTGTAATTCTGAGATTGGTTTTGGACGATATCTAAATTGCTTGAGTGCATTCTGGCATCCTGAATGCTTCCTTTGCCGTGCTTGCAACCTCCCAATCTCTGATTATGAGTTTTCCACATCTGGGAATTACCCTTATCATAAATCATGCTACAAAGAAAACTACCATCCAAAATGTGATGTCTGCAAGCACTTTATTCCAACAAACCCTGCTGGTCTTATTGAATATAGAGCACATCCTTTCTGGATCCAGAAATATTGCCCTTCTCACGAACATGATGGTACTCCACGCTGTTGCAGCTGTGAGCGTATGGAGCCACGAGAGACAGGATACATTGCTCTTAATGATGGTCGAAAGCTATGCCTGGAATGTCTGGATTCTGCCATCATGGATACTAGCGAGTGCCAACCCCTTTATTCAGACATACAAAAATTTTATGAAGGTCTTCATATGAGACTGGAGCAGCAAGTTCCATTGCTCTTGGTTGAAAGACAAGCACTGAATGAAGCAAGAGAGGGGGAGAGGAATGGCCACTATCACATGCCTGAGACCAGGGGACTCTGCCTTTCTGAAGAACAGACTATCAGCACTGTCTTGAGGCGACCTAGGTTTGGAATGGGCAATAGGGCAGTAGACATGAGAACACGACCCTACAAAGTGACTCGACGATGTGATGTGACGGCAATTCTCATTTTGTATGGCCTTCCCAGGTTACTTACTGGATCAATCCTAGCTCATGAAATGATGCATGCATGGCTGCGACTTAAAGGTTATCGGACTCTCAGACAAGATGTTGAAGAAGGTATCTGTCAGGTTGTGGCGCATATGTGGTTGGAGTCTGAGCTTTCATCTGCATCATCAGCCTCATCCTCATCTTCATCCTATGCATCCAGGAAAGCCAAAAGACCTCAATTTGAGAGGAAGCTGGGGGAATTTTTCAAGCACCAGATCGAATCAGATATTTCCCCCGTTTATGGCGATGGATTCAGGGCAGGCCAGCTGGCAGTTCGTAAGTATGGTCTCGAAAACACCCTTCACCATATTTGGATGACTGGGAATTTCCCCCCCTAA 2436 0.445 MGNQPGKGFCGLKTRIRREPKGFIHHQASQSHVGIRTVDVDEVSNLSTGSDLCISIVTWNMNGQVTFEDLAEMVGDNCEFDLLAIGLQEAPRNKVAKMLKAALVDTHILIGKVTMQSLQLYLFGPKNAGSLIRELKVDKQSVGGCGGIIGRKKGAVAIWINYKSIRMVFLSCHLSAHARRVEERNSECRHISHSLFSKNWNPYARPAHVTVWMGDLNYRLQGIDTYPARALIQTDLHKLLGKDQLLQEAGRGQIFNGYCEGTLTFRPSYKYNVGSSNYDTSYKVRVPAWTDRILFKVEDEDKMEAILHSYDSMDEINGSDHKPVKARLCLRLRQTSPLLDVWSENENEDIDRAIALSIVEENQPRKNIKDRKSQLEEDEQLARAIQESLNVESPPRYGNGNMYQPQCLCISPWGPDSKASTLYRDHFSFYVMLHNQLYMRCKHNQICSFSYRICAGCNSEIGFGRYLNCLSAFWHPECFLCRACNLPISDYEFSTSGNYPYHKSCYKENYHPKCDVCKHFIPTNPAGLIEYRAHPFWIQKYCPSHEHDGTPRCCSCERMEPRETGYIALNDGRKLCLECLDSAIMDTSECQPLYSDIQKFYEGLHMRLEQQVPLLLVERQALNEAREGERNGHYHMPETRGLCLSEEQTISTVLRRPRFGMGNRAVDMRTRPYKVTRRCDVTAILILYGLPRLLTGSILAHEMMHAWLRLKGYRTLRQDVEEGICQVVAHMWLESELSSASSASSSSSSYASRKAKRPQFERKLGEFFKHQIESDISPVYGDGFRAGQLAVRKYGLENTLHHIWMTGNFPP 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g0177 811 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 447 479 - -
Lele26g0177 811 ProSiteProfiles Ubiquitin-interacting motif (UIM) domain profile. 376 395 IPR003903 -
Lele26g0177 811 PANTHER PROTEIN DA1-RELATED 2 317 810 IPR045218 -
Lele26g0177 811 SMART uim 345 364 IPR003903 -
Lele26g0177 811 SMART uim 376 395 IPR003903 -
Lele26g0177 811 Pfam LIM domain 454 508 IPR001781 -
Lele26g0177 811 ProSitePatterns LIM zinc-binding domain signature. 454 488 IPR001781 -
Lele26g0177 811 SMART lim_4 453 505 IPR001781 -
Lele26g0177 811 SMART i5p_5 50 336 IPR000300 GO:0016791|GO:0046856
Lele26g0177 811 Pfam Protein DA1 603 805 IPR022087 -
Lele26g0177 811 Gene3D Endonuclease/exonuclease/phosphatase 32 362 IPR036691 -
Lele26g0177 811 ProSiteProfiles LIM domain profile. 452 512 IPR001781 -
Lele26g0177 811 FunFam Type IV inositol polyphosphate 5-phosphatase 11 32 337 - -
Lele26g0177 811 Pfam Endonuclease/Exonuclease/phosphatase family 57 321 IPR005135 GO:0003824
Lele26g0177 811 Gene3D Cysteine Rich Protein 450 513 - -
Lele26g0177 811 CDD LIM_DA1 454 506 - -
Lele26g0177 811 SUPERFAMILY DNase I-like 46 332 IPR036691 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g0177 Lele-ChrLele26 1038069 1046962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g0177 58 332 Acyl Lipid Metabolism Gene Families AT2G43900 28.448 1.93e-23 105
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lele26g0177 Exo_endo_phos 1.6e-06 CL0530
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g0177 26 1038069 1046962 Lele27g1914 27 23702851 23707625 hybridization
Lele26g0177 26 1038069 1046962 Lele28g0180 28 1051228 1056410 hybridization