Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g0175 ATGCTTGATTGCGGTCTGTTCCGTCTGATGGCAAGCAGGTTTGGGGAATCAACGAGCAGATCCCCTCCAAGCCCTTCCTTCTCCAGCAACAATAGTAACAGCGATGCAGGCAATTTTGAATGCAACATATGCTTTGACTTAGCACAAGACCCTATCATTACTTTATGTGGCCATCTTTTCTGTTGGCCCTGTCTTTACAAATGGCTTCACTTTCACTCACAGTCACGAGAATGCCCAGTGTGTAAGGCCCTCATTGAGGAGGAGAAAGTGGTCCCCTTATATGGGAGGGGTAAGTCCTCATCTGACCCAAGGTCGAGGTCTGTTCCTGGCATGAACATACCACATCGTCCATCAGGTCAGCGACCTGAAACCGCCCCGCCACCTGAATCAAACCACTTTCCTCAACATGGGTTTGGATTCATGGGTGGGTTGGGAGGCTTTGCTCCTGCAGCAACAACAAGATTTGGGAATTTCACATTCTCCACAGGATTTGGCGGTTTTATTCCATCATTGTTTAACTTTCAACTGCATGGATTTCATGATGGAGCTATGTATGGCAATCCAACTGGTTTTCACTACGGATTTCCTAATTCATTTCATGGTGGCCACCACCCTCATGGATATTATCCTCGTCATACAGGTCAAGGGCAACAAGATTATCTTCTAAAAAGGCTTATTATGCTTGTTGTTTTTTGTGTTGTTCTTGCTTTTATTTGGCAATAG 723 0.455 MLDCGLFRLMASRFGESTSRSPPSPSFSSNNSNSDAGNFECNICFDLAQDPIITLCGHLFCWPCLYKWLHFHSQSRECPVCKALIEEEKVVPLYGRGKSSSDPRSRSVPGMNIPHRPSGQRPETAPPPESNHFPQHGFGFMGGLGGFAPAATTRFGNFTFSTGFGGFIPSLFNFQLHGFHDGAMYGNPTGFHYGFPNSFHGGHHPHGYYPRHTGQGQQDYLLKRLIMLVVFCVVLAFIWQ 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g0175 240 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 25 95 - -
Lele26g0175 240 MobiDBLite consensus disorder prediction 95 130 - -
Lele26g0175 240 CDD RING-HC_AtRMA_like 39 83 - -
Lele26g0175 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 25 95 IPR013083 -
Lele26g0175 240 ProSiteProfiles Zinc finger RING-type profile. 41 82 IPR001841 -
Lele26g0175 240 SUPERFAMILY RING/U-box 38 94 - -
Lele26g0175 240 Pfam Zinc finger, C3HC4 type (RING finger) 41 81 IPR018957 GO:0046872
Lele26g0175 240 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 23 235 IPR045103 GO:0005783|GO:0006511|GO:0061630
Lele26g0175 240 ProSitePatterns Zinc finger RING-type signature. 56 65 IPR017907 -
Lele26g0175 240 SMART ring_2 41 81 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g0175 Lele-ChrLele26 1029753 1031487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g0175 39 223 C3H Transcription Factor Family AT1G19310 66.138 1.33e-84 249