Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g0148 ATGGCTGAGGTGCTAGACAATGACACTCTTGAAAGGGTGAAGCATTCCACTGAACAGGATATTTCGGATGAGTTAGATCTGAAAATAAAGAAGTATCTGAGAGGAGAAGGTGCGAATTTGGAGGTTTTGAGAGACAAAAAACTGAAGGGTCAACTTTCTCTTAGAGAAGAGTTATATGGTAAATCAGCTAAAGTTGCCGCGAAGGCTGATAAGTGGCTGGCACCCTGTGAGGGAGGTTATCTAGAGGCTGAAGGCATAGAGAAGACATGGAGGATCAAACAAGAGGCAATAGCTAAAGAAGTAGATATCTTGAGCTCAAGAGACCAATATGATATTATTTTACCAGAACTTGGTCCGTACATTTTGGAGTTTACTTCAAGTGGCCGGTATATGGCTATTGGAGGACGTAAGGGCCATTTGGGAATTGTGGACTTGATAAATATGAGCTTAATCAAAGAATTTCAGGTTAGAGAAACAGTCCGTGATGTGACATTCTTGCATAATGAGCTGTTTCTTGCTGCTGCGCAGAAAAAGTATACTTACATCTATGACCGTGCTGGCACTGAGCTTCACTGCCTTAAGGAGCATGGTTCTGTGTTAAGGCTTCAGTTTCTTAAAAACCACTTCCTTCTGACTTCAATAAACAAGTATGGGCAGCTGCATTATCAGGATGTTACGACGGGTACAATGGTTGGTAATATTCGAACTGGTTTAGGTCGTACTGATGTGATGCAAGTGAACCCCTTCAATGGGGTTGTTGCTTTGGGTCATTCAGGCGGTATGGTCACAATGTGGAAACCTACAAGCTCAGCTCCTCTTGTCAAGATGTTGTGTCATCATGGTCCTCTCTCAGCTCTGGCATTTCACTCAAATGGCCACTTAATGGCCACAGCTGGAAAAGACAAAAAAATAAAGCTTTGGGACTTGAGGAAATTTCAGGTCCTCCAGACAGTACCCGGCCATGCCAACACCTTGGATTTTAGTCAAAAAGGATTACTTGCATGTAGTACTGGACCTTACATACAGGTTCTGGGTGATCTTACTGGTTCGCAGAATTATTCGAGGTATATGTCTCATTCCATGGTTAAAGGTTACCAAATAGCAAAGTTAATGTTTCGACCGTATGAAGATGTTCTAGGCGTAGGGCATTCCATGGGTTGGTCCAGCATTCTCATTCCAGGATCGGGAGAACCTAACTTCGATACATGGGTGGCTAATCCATTTGAAACATCCAAACAGAGGAGAGAGAAAGAAGTTCGCTCACTGTTGGATAAGCTGCCGCCTGAGACGATCATGTTGGACCCAAGCAAAATTGGTACGGTAAAGCCTACACCGAGAGAGAAGATGACAAAGGAGAGGGTGACAGAGATAGAAGCTGCTGTTGAAGCTGCCAAGGACATTAAAATGAAGAAAAAAACTAAAGGAAGAAGTAAACCAAGCAAGATGACCAAGAAAAAGAAGGAAGCAATTTTGAAAGTGAAGAGGCCTTTCTTGGAAGAAAAACTTGAGGAAGCATTTACCAGAAAGAAACAAAAAATCAGCGAGGAAGCTAGTTTACCAGAATCATTAAAGAGGTTTGCTGGGAGAAAACCAGCAACATGA 1602 0.4263 MAEVLDNDTLERVKHSTEQDISDELDLKIKKYLRGEGANLEVLRDKKLKGQLSLREELYGKSAKVAAKADKWLAPCEGGYLEAEGIEKTWRIKQEAIAKEVDILSSRDQYDIILPELGPYILEFTSSGRYMAIGGRKGHLGIVDLINMSLIKEFQVRETVRDVTFLHNELFLAAAQKKYTYIYDRAGTELHCLKEHGSVLRLQFLKNHFLLTSINKYGQLHYQDVTTGTMVGNIRTGLGRTDVMQVNPFNGVVALGHSGGMVTMWKPTSSAPLVKMLCHHGPLSALAFHSNGHLMATAGKDKKIKLWDLRKFQVLQTVPGHANTLDFSQKGLLACSTGPYIQVLGDLTGSQNYSRYMSHSMVKGYQIAKLMFRPYEDVLGVGHSMGWSSILIPGSGEPNFDTWVANPFETSKQRREKEVRSLLDKLPPETIMLDPSKIGTVKPTPREKMTKERVTEIEAAVEAAKDIKMKKKTKGRSKPSKMTKKKKEAILKVKRPFLEEKLEEAFTRKKQKISEEASLPESLKRFAGRKPAT 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g0148 533 ProSitePatterns Trp-Asp (WD) repeats signature. 295 309 IPR019775 -
Lele26g0148 533 SMART WD40_4 147 184 IPR001680 GO:0005515
Lele26g0148 533 SMART WD40_4 269 308 IPR001680 GO:0005515
Lele26g0148 533 SMART BING4CT_2 355 435 IPR012952 -
Lele26g0148 533 ProSiteProfiles Trp-Asp (WD) repeats profile. 276 317 IPR001680 GO:0005515
Lele26g0148 533 MobiDBLite consensus disorder prediction 470 489 - -
Lele26g0148 533 FunFam U3 small nucleolar RNA-associated protein 7 108 390 - -
Lele26g0148 533 MobiDBLite consensus disorder prediction 509 523 - -
Lele26g0148 533 Pfam BING4CT (NUC141) domain 356 434 IPR012952 -
Lele26g0148 533 MobiDBLite consensus disorder prediction 509 533 - -
Lele26g0148 533 PANTHER WD-REPEAT PROTEIN BING4 13 527 IPR040315 -
Lele26g0148 533 Pfam WD domain, G-beta repeat 277 308 IPR001680 GO:0005515
Lele26g0148 533 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 276 310 - -
Lele26g0148 533 Gene3D - 116 390 IPR015943 GO:0005515
Lele26g0148 533 MobiDBLite consensus disorder prediction 468 489 - -
Lele26g0148 533 SUPERFAMILY WD40 repeat-like 118 382 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g0148 Lele-ChrLele26 832840 837365 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g0148 169 331 U-box Gene Family AT1G04510 26.286 6.69e-11 62.8