Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g0139 ATGCCTTTCAAAGAATTTGTGCGTGAGCTCAGGGATATTCGAGATGGCATGGGAAATATTTCTATAAGAGGGGTGGAAGCAAATCGCATCCCTTGCCGTGGAAGATCTCTTATTGTCCCTGAATTCTCCTCACCTGTTTCATTAGTGACTCAGCAGAGCCCCTGGGCTAACTTACCATCTGAGTTGTTATTAGACATAATTCAGAGGGTGGAAGCAAGCGAAACTTCCTGGCCTGCCCGGCGGGCGGTTGTAGCTTGTGCCTCAGTTTGTAGGTCATGGAGGAAGATAACAAAGGAGGTGGTCAAGACACCAGAACAGTGTGGTTGGCTTACCTTCCCCATATCGCTGAAGCAGCCTGGTCCAAGAGAGACTCCCATCCAGTGTTTTATAAAGAGAGAAAGGGCGACTTCGAAATATCTTTTATATCTTGGTCTAAGTCCAGCTCTCTCTGGGGATATGAGTAAACTTCTACTGGCAGCAAAGAAGATTAGACGGACATGTACAGAGTTTGTAATATCCTTGGTTGCAGATGATTTTTCTAAAGCAAGCAATACTTACGTTGGAAAGCTGAGGTCTAATTTTCTAGGTACCAAGTTCATGATCCTGGATGGTCAACTCCCGCTTGATTCTTCCCTTCCGTTGAATAGTAAATTGCAGCAAAGAATCCATTCAAAGCAAGTTCTTCCAAGGGCTGCTGTAGCAAAGCATAATGTGGCCGCGATATCATATGAGCTCAATGTTCTCCGCACAAGAGGTCCAAGGAGAATGCGGTGCACCATGCATTCAATTCCAGTGGTTTCCATCCAAGAAGGGGGCACTGCTCCTACTCCTTTGAAGTTTACTAGATGCCCTGATGAGCATATATCTTCCACGCCCATTTCAAAAGAAAGAAAGCCAGGAGAAGAGTGGGGCTCCAATAGCGAAGATAAGCCCCCAGAATCGAACCACATGACAAGGGAGCCACTGATTTTGAAAAACAAAGCTCCTAGGTGGCACGAACAACTGCAATGTTGGTGCTTGAATTTCAAGGGACGTGTTACGGTGGCCTCAGTAAAGAACTTCCAGCTCGTAGCTGCTGCAGAACCTCAACAAAATGTTTCAGCGGCAGAACAGGATAGAGTGATACTACAATTTGGGAAAATTGGAAAGGACATATTCACGATGGATTATCGTTATCCCCTCTCTGCATTTCAAGCCTTCGCGATCTGCTTGAGCAGCTTTGACACCAAACCTGCTTGCGAAAGGAGAATACAAAAGATGCTAGGAATTTGGCGGGGAGTAAGGTTGCGCCAAAAACCCCCAAGGCCTGCGATATTACAATTCCACGGGAATGGAATCATCAACATGGAAAGCATATATTCACGCTTTGGATGCGTCACGTCGTCCCCACCAATGCAGCAGAAAGGGTTGGAGAATGTTACAGTTTCTGACATACTACTCTCAAAGGGAGATGAAAAAGTCGGTTCATGGCTCTGGTGCCGAGTTGATGATGTTGTTATTAATGCAATGAAGAACATGGCTGCGAACAATATTGGATCTCTGGTGGTGCTAAAGCCCGAGGGTCATATAGCTGGAATCGTCACAGAAAGAGACTGCTTGAAGAAAATAGTGGAGAAAGGAAGATCACCAGTGTACACACAAGTTGGTGAAATTATGACTGAAGAGAAAAATCTAATGACGGTGACCTCAGACATGAACATCCTACAAGCAATGAGAATTATGACAGAGAATCAGATAAGACATGTGCCAGTAATTGACGGGAAAGTAGTGGGAATGATTTCAATGGTGGATGTGGTGAGAGCAGTAATGGAGCAGCAAACAGGAGAACTGAAGCGACTCAATGATTACGTCAGAGGAGAATACTACTAG 1869 0.4516 MPFKEFVRELRDIRDGMGNISIRGVEANRIPCRGRSLIVPEFSSPVSLVTQQSPWANLPSELLLDIIQRVEASETSWPARRAVVACASVCRSWRKITKEVVKTPEQCGWLTFPISLKQPGPRETPIQCFIKRERATSKYLLYLGLSPALSGDMSKLLLAAKKIRRTCTEFVISLVADDFSKASNTYVGKLRSNFLGTKFMILDGQLPLDSSLPLNSKLQQRIHSKQVLPRAAVAKHNVAAISYELNVLRTRGPRRMRCTMHSIPVVSIQEGGTAPTPLKFTRCPDEHISSTPISKERKPGEEWGSNSEDKPPESNHMTREPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPQQNVSAAEQDRVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACERRIQKMLGIWRGVRLRQKPPRPAILQFHGNGIINMESIYSRFGCVTSSPPMQQKGLENVTVSDILLSKGDEKVGSWLWCRVDDVVINAMKNMAANNIGSLVVLKPEGHIAGIVTERDCLKKIVEKGRSPVYTQVGEIMTEEKNLMTVTSDMNILQAMRIMTENQIRHVPVIDGKVVGMISMVDVVRAVMEQQTGELKRLNDYVRGEYY 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g0139 622 Pfam F-box domain 55 101 IPR001810 GO:0005515
Lele26g0139 622 ProSiteProfiles CBS domain profile. 552 610 IPR000644 -
Lele26g0139 622 SMART cbs_1 489 537 IPR000644 -
Lele26g0139 622 SMART cbs_1 557 603 IPR000644 -
Lele26g0139 622 MobiDBLite consensus disorder prediction 276 318 - -
Lele26g0139 622 Gene3D - 49 101 - -
Lele26g0139 622 SUPERFAMILY CBS-domain pair 471 618 IPR046342 -
Lele26g0139 622 ProSitePatterns Tub family signature 2. 399 414 IPR018066 -
Lele26g0139 622 CDD CBS_pair_bac_euk 493 600 IPR044725 -
Lele26g0139 622 Gene3D - 468 621 IPR046342 -
Lele26g0139 622 Pfam Tub family 116 409 IPR000007 -
Lele26g0139 622 ProSitePatterns Tub family signature 1. 342 355 IPR018066 -
Lele26g0139 622 MobiDBLite consensus disorder prediction 289 316 - -
Lele26g0139 622 Gene3D Tubby Protein; Chain A 113 414 IPR025659 -
Lele26g0139 622 SUPERFAMILY F-box domain 51 118 IPR036047 GO:0005515
Lele26g0139 622 PRINTS Tubby superfamily signature 186 210 IPR000007 -
Lele26g0139 622 PRINTS Tubby superfamily signature 235 262 IPR000007 -
Lele26g0139 622 PRINTS Tubby superfamily signature 392 414 IPR000007 -
Lele26g0139 622 PRINTS Tubby superfamily signature 371 390 IPR000007 -
Lele26g0139 622 PRINTS Tubby superfamily signature 170 186 IPR000007 -
Lele26g0139 622 PRINTS Tubby superfamily signature 342 358 IPR000007 -
Lele26g0139 622 PRINTS Tubby superfamily signature 324 341 IPR000007 -
Lele26g0139 622 ProSiteProfiles CBS domain profile. 480 544 IPR000644 -
Lele26g0139 622 Pfam CBS domain 493 537 IPR000644 -
Lele26g0139 622 Pfam CBS domain 548 603 IPR000644 -
Lele26g0139 622 PANTHER TUBBY-RELATED 49 412 - -
Lele26g0139 622 SUPERFAMILY Tubby C-terminal domain-like 104 414 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g0139 Lele-ChrLele26 806644 810483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g0139 1 414 TUB Transcription Factor Family AT2G18280 57.831 3.47e-160 463
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lele26g0139 Tub 1.8e-100 CL0395