Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g0109 ATGACCTCAGTTATAATGGCTATGTCGCGTGGGAGCCGTCCGATCGGGGGAAGTCATGATGAAAAGCAAGATTTAAGCGGCGACGGAGAAGCCTGTGAGAAAATGCGCGACGCAGATTTGGGGAAACTTCTCTGCTATGGATTGTATGCCTCAATTGGACACTGTTTCAGCTTGTGGGTGCAACAAATGGCTGGCTTCTTCTCTCTAGGCCCACAGAACAAACAAGAAGAAGAAAAGGAAGATAACAACAACAGTAACAACCTATTCTTGTTCAGGAACGAGGAGATCTACAACAAAGGATTCGAGATATGGCCACAGTCCTATCAACCGCATCACAACTTGAGCAGCTACTACTCGTTTGGGGCCGGTCCTAGTCGCAGAAACTCCTCCAACGACGACGTCGTCTCTGACGACTCTACCAGGTTCGGATTCACGGTCATGCGGTCTGGAGGTTTAGGAGGTGGCATGAACTGTCAGGATTGTGGCAACCAAGCTAAGAAGGACTGTCCACATCTCAGATGCAGAACTTGCTGTAAGAGCCGAGGGTTTCAGTGCCAAACCCACGTCAAGAGCACTTGGGTTCCCGCAGCTAAACGCCGCGAACGACAGCAACAACTGGCTACGTTGCAGCAGCAGCAGGACCAACAATTTAGGGGAGATAATTCCAAACGACACAGAGAAAATCAAGCTTCCGGCTCTCTTGCCTGCGCTCCATTGATGCCAATTGCCACTACAGGGTTGGAACTGGGACAATTCCCACCAGAGGTGAACTCTTCGGCCGTGTTTCGCTGTGTGAGAGTAAGCGCAATGGACAGCCCAGAGGACCAGTACGCGTATCAAACGGCTGTGAACATCGGAGGTCACCTTTTCAAGGGAATTCTGTATGACTATGGCCCTGAAGGTGCTTACACCACAGGTGGTGAGAGCTCCCCCGGTGGAGCTGAAGCTCAACAATTAAATCTCATAACCGCGTCGACCACCACGAACACGGCGACAACAAGCGCCAACCCATTTGATCCATCTTCACTATACCCGGCTCCGCTCAATGCCTTCATGGCTGGTACGCAATTCTTCCCACCTCCAAGGTCCTAA 1092 0.5119 MTSVIMAMSRGSRPIGGSHDEKQDLSGDGEACEKMRDADLGKLLCYGLYASIGHCFSLWVQQMAGFFSLGPQNKQEEEKEDNNNSNNLFLFRNEEIYNKGFEIWPQSYQPHHNLSSYYSFGAGPSRRNSSNDDVVSDDSTRFGFTVMRSGGLGGGMNCQDCGNQAKKDCPHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLATLQQQQDQQFRGDNSKRHRENQASGSLACAPLMPIATTGLELGQFPPEVNSSAVFRCVRVSAMDSPEDQYAYQTAVNIGGHLFKGILYDYGPEGAYTTGGESSPGGAEAQQLNLITASTTTNTATTSANPFDPSSLYPAPLNAFMAGTQFFPPPRS 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g0109 363 MobiDBLite consensus disorder prediction 1 28 - -
Lele26g0109 363 MobiDBLite consensus disorder prediction 203 217 - -
Lele26g0109 363 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 63 349 IPR007818 GO:0003700|GO:0006355
Lele26g0109 363 Pfam Domain of unknown function (DUF702) 155 300 - -
Lele26g0109 363 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 157 199 IPR006510 -
Lele26g0109 363 MobiDBLite consensus disorder prediction 199 231 - -
Lele26g0109 363 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 251 299 IPR006511 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g0109 Lele-ChrLele26 624116 626566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g0109 63 363 C2H2 Transcription Factor Family AT1G75520 48.626 5.52e-89 270
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Lele26g0109 DUF702 2.2e-65 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g0109 26 624116 626566 Lele01g0961 01 5552176 5553625 CCT
Lele26g0109 26 624116 626566 Lele03g0957 03 5572198 5576493 CCT
Lele26g0109 26 624116 626566 Lele04g0956 04 5916811 5918198 CCT
Lele26g0109 26 624116 626566 Lele27g1986 27 24099494 24101929 hybridization
Lele26g0109 26 624116 626566 Lele28g0108 28 636758 638107 hybridization