Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g0061 ATGAAAGATCACGCTACTCCCTCGCATTCTGTTTCTTCAGCTGTTCCATCCACTTTACAGCATTTGAAGGAAATAGCATCCCTTATTGAGACCGGTTCCTATTCAAAGGAAGTTCGCAGAATTGCTCGTGCTATTCGCCTTACAATTGCCCTGAGGCGGAAATTGACAGGATCGGTGCTCTCATCTTTTCTCGACCACATTCTCACTCCAGGTTCTGAGGCTCACGCCAGATTGTCCGCCTATGTTCCCAGGGAGGAAGATCATGAGATGGAAGTGGATACTGCAACTTCTGCTGTTCAAGTCCCATGTAAACACCTACTGCCTGAGCTAGAGATCTACTGCTACTTACTCGTACTACTGTTTCTTATTAATCAGAAAAGATACAACGAGGCCAAAACCTGTTCCTCAGCAAGTATTGGTCGACTCAAGAATCTGAACAGAAGAACTGTTGATGTCATTGCTTCCAGACTATACTTCTATTACTCATACAGCTATGAACTTACAGGACACCTGGCTGAAATTCGGGGCAACCTCCTTGCATTGCATCGTATTGCCACTCTCCGCCATGATGAGCTGGGTCAGGAAACACTTCTTAATCTTTTACTTCGTAATTACCTCCACTACAACCTATATGACCAAGCCGAGAAGTTAAGGTCCAAGGCACCACAATTTGAAGCACATTCAAACCAGCAGTTCTGTCGTTATCTCTTCTACCTTGGGAAGATTCGTACCATACAGTTGGAGTATACCGATGCAAAAGAGTCACTCTTGCAGGCTGCCCGAAAAGCTCCAGTTGCAGCGCGAGGCTTTCATATTCAATGTAATAAGTGGGCTGTAATTGTGCGCCTGCTGTTGGGAGAAATACCTGAAAGGACTATCTTTATGCAGAGAGGTGCGGAGAAAGCTTTGAGGCCTTACTTTGAGCTTACAAACGCGGTGCGCATTGGTGATCTGGAATTGTTTAGGAATGTTGCAGAAAAGTTTGCTAACACATTTAATACAGATGGAACTCATAACTTGATTGTTCGGCTGCGACATAATGTTATCCGAACTGGTTTACGCAACATCAGCGTGTCTTATTCTCGCATCTCGCTTGCTGATGTAGCTCAAAAATTGAGGTTGAACTCTGCCAACCCTGTTGCAGATGCTGAGAGCATTGTAGCCAAGGCCATCCGCGATGGGGCAATTGATGCTACATTGGATCATGCTAACGGGTGGATGGTATCCAAGGAAACTGGAGATATTTACTCCACAAACGAACCTCAATTGGCTTTCAATTCTCGAATTGCCTTCTGTCTTAACATGCACAATGAAGGCGTTAGGGCACTGCGTTTCCCACCTAATACACACAAGGAAAAGGAAAGTGCTGAGAAAAGGAGAGAGAGGCAACAACAAGAGCAAGAACTGGCGAAGCATATAGCAGAGGAAGATGATGACGATTTCTGA 1446 0.4502 MKDHATPSHSVSSAVPSTLQHLKEIASLIETGSYSKEVRRIARAIRLTIALRRKLTGSVLSSFLDHILTPGSEAHARLSAYVPREEDHEMEVDTATSAVQVPCKHLLPELEIYCYLLVLLFLINQKRYNEAKTCSSASIGRLKNLNRRTVDVIASRLYFYYSYSYELTGHLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPQFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAARGFHIQCNKWAVIVRLLLGEIPERTIFMQRGAEKALRPYFELTNAVRIGDLELFRNVAEKFANTFNTDGTHNLIVRLRHNVIRTGLRNISVSYSRISLADVAQKLRLNSANPVADAESIVAKAIRDGAIDATLDHANGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEGVRALRFPPNTHKEKESAEKRRERQQQEQELAKHIAEEDDDDF 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g0061 481 MobiDBLite consensus disorder prediction 445 474 - -
Lele26g0061 481 SMART PINT_4 339 432 IPR000717 -
Lele26g0061 481 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 339 432 - -
Lele26g0061 481 ProSiteProfiles PCI domain profile. 233 414 IPR000717 -
Lele26g0061 481 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 8 472 - -
Lele26g0061 481 Gene3D - 238 430 - -
Lele26g0061 481 Pfam Proteasome regulatory subunit C-terminal 414 480 IPR013586 GO:0000502|GO:0030234|GO:0042176
Lele26g0061 481 MobiDBLite consensus disorder prediction 445 481 - -
Lele26g0061 481 Coils Coil 448 475 - -
Lele26g0061 481 FunFam 26S proteasome non-ATPase regulatory subunit 3 114 437 - -
Lele26g0061 481 Pfam PCI domain 305 410 IPR000717 -
Lele26g0061 481 SUPERFAMILY "Winged helix" DNA-binding domain 340 415 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g0061 Lele-ChrLele26 335090 338293 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g0061 26 335090 338293 Lele01g1164 01 6925685 6933670 CCT
Lele26g0061 26 335090 338293 Lele02g1431 02 18609247 18613340 CCT
Lele26g0061 26 335090 338293 Lele03g1178 03 6899671 6906376 CCT
Lele26g0061 26 335090 338293 Lele04g1412 04 19471437 19475527 CCT
Lele01g1175 01 6999030 7003466 Lele26g0061 26 335090 338293 CCT
Lele02g1442 02 18691502 18695355 Lele26g0061 26 335090 338293 CCT
Lele03g1190 03 6973599 6978072 Lele26g0061 26 335090 338293 CCT
Lele04g1424 04 19551137 19554556 Lele26g0061 26 335090 338293 CCT
Lele26g0061 26 335090 338293 Lele27g2036 27 24403034 24406313 hybridization
Lele26g0061 26 335090 338293 Lele28g0060 28 332220 336525 hybridization