LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele26g0039	ATGGCAGGCCAGAGCTCTAACGATTGCCCCAGTGCTAGTACTGTTTCAGCAGAATTGTCTGATTCAACTGTTCAGCTCAATATCAAGACTTTAGATTCCCACATATACAGTTTTCAAGTGGATAAAAACATGCTAGTTTCATTGTTGAAGGACAAAATAGCCAATGAAGTTGGTGTTCCAGTAGGTCAGCAGCGGTTAATATTCAGGGGGAAAGTGCTGAAGGATAATCATGTTCTTTCTGAGTATCATATTGAGAATGGGGATACATTGCATTTAGTTCAAAGGCAACTGAACCAGTCACAGGCTCCTGGTACCAGTTCTGGTGAGACAACTGGTACAAGTGGAAACCGAGGAAATGATGCAAGCCCTGGGGCGCATCATAACCGTGTTGGGCAAATTTCACACAGTGTTGTTCTTGGGACCTTTAATGTGGGGGAACAAGGTGAAGGAATTGTTCCTGATCTTAGTCGGGTCATTGGGGCAGTTTTGAACTCTATTGGAATGGGTGGGCAGAGCACTGGTGGTGTTACAAATGGTACACAGTCTTCTTCACCAAATCCTTCTACTCAGGGTCCTTCTGGGAATGAAGCTGGGGGAATTCATCTTGAAAATCAGAACCAATCAGGAAATCAAGCACAGACTGGACAAGCATTTCCAAACCAACCATTCCAATCTTTACCTCAAGTAGTTCAGATTCCTCTGGCTGCAGGATCCACAACTGTGCCATCACTTAGTGCACCAATTCCTCATTCACTGAATACTCTTTCTGAGTTTATAAATCGCATGGAGCAGACACTATCACAAAATGGTTATCAAACAAATTCGTCTTCACTGAGTGGAGGAGAGCAAACACATGTGGAATTACCCTCCAACCCACAAGGGTTGCCAACAGTTGAAGCATTAAGTGCTGTCTTGCATCATGCTGAACGGCTGCTCGGTGGCCATGCTATTGCTGCACTATCTCATATTGCAGGACGCTTGGAGCGAGAGGGAACTACTTCTGATCCAAATATACGGGGTCAAATACAGTCTGAGTCAATGCAAATAGGACTTGCCATGCAGCATTTGGGTGCATTTCTACTTGAGCTTGGCCGTACAATCTTGACACTGCGAATGGGGCAGTCTTCTGCAGAGTCTGCTGTCAATGCTGGGCCAGCAGTTTATATTTCCCCATCAGGACCTAATCCTATAATGGTGCAGCCTTTCCCACTTCAAACAAGCTCCCTGTTTGGTGGTTCTGTACCTTCTTCAACTCCTGCAACATTTGGTACAGTTGGTGTTGGAAATACCCCTCGGAATGTAAACATCCATATACACGCCGGTACTTCTCTTGCGCCAATTGTTTCGGCAATTGGTTCTAGGCCAAATAATGGGGAAGGGGCACAAAATGAACGTCGTAATGCTCCTGGCTCTGGTGATTTAGGATCAATGCGTGCTTTACCTGTGAGAAATATCATTGCAGCAGCTGTACCAGCTTACCCTCCTGGAGCTGGGACCAGTAGTGGCATGCAATCAAGTGGTGTTCCTACTTCACAACTGCATTCTGATTCAGTTTCATTATCATCCGTCATAGCTGATATCAATTCTCGCGCTAGAAACATTTTAGGAAATATGCGAGGAGATAATACAGTTCTGTCAGGTCAAGTGGAGTCAATCGACCGGGACTTGCCTGTTGAAAGGGAATCACGACCTACTCCTGGAAATGAACAAGTAGATACCATGGAGGCAAATGCTGTTGAAGCTTCCAGTCTGTCTTCAGTTGCTTGCCCATCTGAAAGTGGAGTACATAAGCCCCAACCTGAGGCAGCCCAAACTTCTAACAATGAGGGGAGAGATGTTTTGAGCACCACATTTGGTTCAACGTCTTCCAATGCACAAGAAAATGCTCAATCTGCTGGTGAAAAACATGTAACTGAAAACGAAAAAGCTGTTCCTCTTGGACTGGGTGCGAGTGGCTTGGAGCGTAAGAGGAGAACGAGACCGCAACATCCTGTAAGTAAAGGTGCTGATGATGGATCAGCCAGTTCTTCAGGCAATCAAAATCAGCAAGTCAGGACAAGTGGTCATAACGTATTGCAAGCTCTTGCAAGTCATGGAACTTCTATGAACCAGAGAAATGCTAATGGTCCATCCCAAGTGCCCCCTTCCCCTGGTGATGGCCAGATTGATGTGGCGGGTGTTATGTCTCAGGTCTTGCACAGCCCAGCTTTGAATGGTTTGTTGACAGGGGTTTCACAGCAGACTGGAGTTGGCTCACCTGATGTCTTGAGGAACATGTTGCAGCAGTTCACACAGAGCCCACAGATGAGGAACACTGTCAATCAAATTGCCCAACAGGTTGGCAGTCAGGATATGGGGAATATGTTTGCTGGAATGGAAAGAGGGCAAGGTAGTGGCATTGACTTTTCAAGGATGCTTCAACAGATGATGCCCATTGTATCTCAAGCTCTTGGAGGTGGAATTCCTCCTCAGTCATTCTCTGCTGAAAGGAGAGATCCCCAGGCACTCTTTGGAGATGGAACTCATAGCAGAGATGAAAATGTTGATGACCGAAGTTTACAGATCAATCTTCAACCAGTGGTAGAGAGGATGGAACACCTTAGTGCACAGTCAGATGTTTTCCGTGCGGTCGTTGAAAATGCTATCCAGCTATCCAGAGGGGGAAGTTCTTATGATGGTCTTCTGGATGAGTTGTGTAGCGATGAGTGTCTTGCCGGGGACTATGTGGAAATGTTACGACATGATGTGAATCAGCGGCTGAATGGGGATTCTGGGCGAGACTAG	2784	0.4612	MAGQSSNDCPSASTVSAELSDSTVQLNIKTLDSHIYSFQVDKNMLVSLLKDKIANEVGVPVGQQRLIFRGKVLKDNHVLSEYHIENGDTLHLVQRQLNQSQAPGTSSGETTGTSGNRGNDASPGAHHNRVGQISHSVVLGTFNVGEQGEGIVPDLSRVIGAVLNSIGMGGQSTGGVTNGTQSSSPNPSTQGPSGNEAGGIHLENQNQSGNQAQTGQAFPNQPFQSLPQVVQIPLAAGSTTVPSLSAPIPHSLNTLSEFINRMEQTLSQNGYQTNSSSLSGGEQTHVELPSNPQGLPTVEALSAVLHHAERLLGGHAIAALSHIAGRLEREGTTSDPNIRGQIQSESMQIGLAMQHLGAFLLELGRTILTLRMGQSSAESAVNAGPAVYISPSGPNPIMVQPFPLQTSSLFGGSVPSSTPATFGTVGVGNTPRNVNIHIHAGTSLAPIVSAIGSRPNNGEGAQNERRNAPGSGDLGSMRALPVRNIIAAAVPAYPPGAGTSSGMQSSGVPTSQLHSDSVSLSSVIADINSRARNILGNMRGDNTVLSGQVESIDRDLPVERESRPTPGNEQVDTMEANAVEASSLSSVACPSESGVHKPQPEAAQTSNNEGRDVLSTTFGSTSSNAQENAQSAGEKHVTENEKAVPLGLGASGLERKRRTRPQHPVSKGADDGSASSSGNQNQQVRTSGHNVLQALASHGTSMNQRNANGPSQVPPSPGDGQIDVAGVMSQVLHSPALNGLLTGVSQQTGVGSPDVLRNMLQQFTQSPQMRNTVNQIAQQVGSQDMGNMFAGMERGQGSGIDFSRMLQQMMPIVSQALGGGIPPQSFSAERRDPQALFGDGTHSRDENVDDRSLQINLQPVVERMEHLSAQSDVFRAVVENAIQLSRGGSSYDGLLDELCSDECLAGDYVEMLRHDVNQRLNGDSGRD	927

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele26g0039	927	MobiDBLite	consensus disorder prediction	450	476	-	-
	Lele26g0039	927	Gene3D	-	13	108	-	-
	Lele26g0039	927	CDD	Ubl_ubiquitin_like	26	93	-	-
	Lele26g0039	927	MobiDBLite	consensus disorder prediction	701	715	-	-
	Lele26g0039	927	MobiDBLite	consensus disorder prediction	98	128	-	-
	Lele26g0039	927	MobiDBLite	consensus disorder prediction	567	633	-	-
	Lele26g0039	927	FunFam	Large proline-rich protein BAG6	16	109	-	-
	Lele26g0039	927	ProSiteProfiles	Ubiquitin domain profile.	24	99	IPR000626	GO:0005515
	Lele26g0039	927	SUPERFAMILY	Ubiquitin-like	20	97	IPR029071	-
	Lele26g0039	927	MobiDBLite	consensus disorder prediction	172	221	-	-
	Lele26g0039	927	MobiDBLite	consensus disorder prediction	669	685	-	-
	Lele26g0039	927	MobiDBLite	consensus disorder prediction	98	121	-	-
	Lele26g0039	927	PANTHER	LARGE PROLINE-RICH PROTEIN BAG6	11	926	-	-
	Lele26g0039	927	SMART	ubq_7	24	95	IPR000626	GO:0005515
	Lele26g0039	927	Pfam	Ubiquitin family	26	96	IPR000626	GO:0005515
	Lele26g0039	927	PRINTS	Ubiquitin signature	55	75	IPR019956	-
	Lele26g0039	927	PRINTS	Ubiquitin signature	76	97	IPR019956	-
	Lele26g0039	927	MobiDBLite	consensus disorder prediction	701	721	-	-
	Lele26g0039	927	MobiDBLite	consensus disorder prediction	545	685	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele26g0039	Lele-ChrLele26	225743	233579	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele26g0039	24	95	Cytoplasmic Ribosomal Protein Gene Family	AT3G52590	40.278	4.01e-11	59.7

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lele26g0039	26	225743	233579	Lele27g2054	27	24495269	24504655	hybridization
	Lele26g0039	26	225743	233579	Lele28g0043	28	222828	230666	hybridization