Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g0019 ATGAGCTGCTTCTCTTGCTTTAGTCCTCGTCGCACAGATGCCAGTAGAATCCAAATTGATAATGCTCCTCGATCTACCTCTTCTTCCGGGACTGGGCGGTCCAAGTCTCATGCCCATAGCGGCGACGATGGAAGCAAGGGAGGATCCTCAGATGGGAAGGGGAAGAATGGCGTTGCGGGCAGCCCAAAAAGCAGTGCAGCCCATAGTTTCACTTTCCGTGAACTTGCAGCGGCAACCAGGGGTTTCAAGCCAGTGAATTTGATTGGGGAAGGAGGTTTTGGAAGGGTTTACAAAGGTCGTCTTGATACAGGCCAGCTTGTTGCCGTAAAACAATTAAATCACGATGGTCATCAAGGTTTTCAGGAATTCATAGTGGAGGTTCTCATGTTAAGCCTGCTACATCATTATAATCTTGTTACCTTGTTTGGTTACTGCACCGACGGAGATCAAAGGCTTTTGGTTTATGAATATATGCCTATGGGTAGCTTAGAAGATCATCTTTTTGATTTAAAACCAGACCAAGAGCTGCTAAGTTGGAACGATCGGATGAAGATTGCTGTTGGGGCTGCACGAGGGCTTGAGTACCTTCATTGTAAAGCAAATCCACCTGTTATCTATCGGGACTTGAAATCTGCGAACATATTATTAGACAATGACTTCCACCCAAAACTCTCAGATTTTGGGCTTGCTAAACTTGGTCCAGTTGGAGATAATACTCATGTTTCAACCAGAGTGATGGGAACATATGGCTACTGTGCCCCAGAGTATGCCATGAGTGGCAAATTGACTCTTAAATCTGATATCTATAGCTTTGGGGTGGTTTTGATGGAGTTGATTACTGGACGAAGGGCAATAGATGTCAGTAAGAAACCAGGGGAGCAAAACTTAGTTGCTTGGTCTCGACAGTTTCTGAAGGATCGGAGGAAGTTTGTACAGCTGATTGATCCTCGTCTTGAAGGACAATTCCCCTTGCGCTGCTTGCATCATGCGATTGCTATCACTGCAATGTGTCTGCAAGAGCAACCGAATTTCCGGCCACTCATTGGTGATATTGTTGTGGCACTGGAATACTTGCACTCGCAGAGTAAAGCCTCAGAAGTCCCTAAAGGTGGGGAGCAATGTGTGCCGCCTCGATCACCCTCACAAGCGGACCGATATTGTTTGGAGGAATCAAATTCTAGATTGAGGTCAACTTCGGCCTAA 1203 0.4613 MSCFSCFSPRRTDASRIQIDNAPRSTSSSGTGRSKSHAHSGDDGSKGGSSDGKGKNGVAGSPKSSAAHSFTFRELAAATRGFKPVNLIGEGGFGRVYKGRLDTGQLVAVKQLNHDGHQGFQEFIVEVLMLSLLHHYNLVTLFGYCTDGDQRLLVYEYMPMGSLEDHLFDLKPDQELLSWNDRMKIAVGAARGLEYLHCKANPPVIYRDLKSANILLDNDFHPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMSGKLTLKSDIYSFGVVLMELITGRRAIDVSKKPGEQNLVAWSRQFLKDRRKFVQLIDPRLEGQFPLRCLHHAIAITAMCLQEQPNFRPLIGDIVVALEYLHSQSKASEVPKGGEQCVPPRSPSQADRYCLEESNSRLRSTSA 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g0019 400 MobiDBLite consensus disorder prediction 365 400 - -
Lele26g0019 400 FunFam probable serine/threonine-protein kinase RLCKVII 55 157 - -
Lele26g0019 400 MobiDBLite consensus disorder prediction 385 400 - -
Lele26g0019 400 CDD STKc_IRAK 88 356 - -
Lele26g0019 400 Gene3D Transferase(Phosphotransferase) domain 1 158 373 - -
Lele26g0019 400 PANTHER OS07G0668900 PROTEIN 29 365 - -
Lele26g0019 400 Gene3D Phosphorylase Kinase; domain 1 57 157 - -
Lele26g0019 400 ProSitePatterns Serine/Threonine protein kinases active-site signature. 204 216 IPR008271 GO:0004672|GO:0006468
Lele26g0019 400 ProSiteProfiles Protein kinase domain profile. 82 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele26g0019 400 ProSitePatterns Protein kinases ATP-binding region signature. 88 110 IPR017441 GO:0005524
Lele26g0019 400 SUPERFAMILY Protein kinase-like (PK-like) 62 357 IPR011009 -
Lele26g0019 400 SMART serkin_6 82 358 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele26g0019 400 FunFam Serine/threonine-protein kinase PBS1 158 372 - -
Lele26g0019 400 MobiDBLite consensus disorder prediction 14 35 - -
Lele26g0019 400 MobiDBLite consensus disorder prediction 14 65 - -
Lele26g0019 400 Pfam Protein kinase domain 85 351 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g0019 Lele-ChrLele26 108545 111407 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g0019 1 390 Glycoside Hydrolase AT3G07070 56.171 5.88e-151 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-1 Lele26g0019 Pkinase 4.5e-47 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele26g0019 26 108545 111407 Lele27g2072 27 24622621 24625474 hybridization
Lele26g0019 26 108545 111407 Lele28g0024 28 108033 110731 hybridization