Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g0016 ATGATTAGAAGCTGTCCAGCCAACCTGGATTTGGAATGCCGGTGGGGTCAATGGCGGAATTCCATTTTGATATTTGTGTTTAATTGTGAAAAAAGTAGGGTTTTCAAAAGACCCTTGCTGCTTCTTACAAGTTGGGAAAGGCTGCTTGATATGATGGCTTCTAGCTGGGATGGAAGTAATGACCCCGGCAGCCAGTCAGATGAGAGCTATCATTTTGAGAGGATGCATATTGAGCCTATTTATGATGCTTTTGTATGTCCACTGACAAAGCAAGTTATGCGTGATCCTGTTACGTTGGAAACTGGACAGACTTTTGAACGTGAAGCAATTGAAAAATGGTTCAAGGAATGCAAGGAGAGTGGGCGCAAACTAGTTTGCCCTTTGACCCTGAAAGAACTAAAAAGCACAGAACTAAATCCCAGTATTGCTTTACGGAACACTATTGAAGAGTGGACTGCAAGGAATGAAGCAGCACAGCTGGACATGGCTCGTAGGTCATTGAATATGGGTAGTCCTGAAAATGATACATTACAGGCATTGCATTATATCCAACACATCTGCCAAAGAAGTAGGTCTAATAAGCATAGTGTCCGTAGTGCGGGGATAATACCTATGATTTTTGACATGTTGAAGAGCAGCAGCCGTAAGGTTCGTTGTATGGCTTTGGGAACCCTTAGAATTGTCGTGGAGGAAGACAATGAGAATAAGGTTGTCACAGGTTTGCTGGAATTGTTGACTGAAGGGGACACCGTGCGTACAATAGTAAAATTCCTTTCTCATGAACTCTCCAAAGAAAGAGAGGAAGCTGTCTCTCTGCTTTATGAGCTCTCAAAATCAGAAACTCTGTGTGAGAAGATAGGTTCAATCAATGGGGCTATTCTTATATTAGTTGGAATGACAAGCAGCAAATCGGAAGATATTTTGACGGTCGAGAAGGCTGAAAAAACATTGGAGAATCTGGAAAAGTGTGAGAATAATGTGCGACAGATGGCTGAAAATGGTAGACTGCAGCCTCTTCTGACACAACTGCTTGAAGGTCCACCTGAAATCAAACTGGCCATGGCCGGGTACCTTGGTGAGCTGGTTTTGAATAATGATGTAAAGGTCCTTGTAGCCAAAACTGTGGGTTCATCTCTGATCAATATAATGAAAAGTGGTAATATGCAGTCCAGGGAAGCTTCGCTAAAAGCTCTTAATCAGATATCATCGTGTGACCCAAGTGCAAAGGTTTTGATAGAGGCTGGAATACTTTCATCTCTTTTCAATGACCTTTTTGCAGTGGGCCCTAATCAGCTTCCCATGCGACTAAAAGAAGTCTCTGCCACAATTCTTGCCAATGTTGTGAACTCAGGAGAGGACTTTGATTCTATCCCATTTGGACCGGATCACCAGACTCTGGTTTCGGAGGACATAGTTCATAATCTGCTCCATCTTATAAGCAATACTGGTCCAGCTATTGAATGCAAACTTCTCCAGGTCCTTGTTGGACTTACTGGTTCTCCAACTACTGTTCTGAGTGTTGTCACAGCTATCAAAAGCTCTGGTGCCATTATCAGTCTTGTTCAATTTATTGAGGCTCCACAGAAAGATTTGCGTGTAGCGTCTATAAAACTCCTTCAGAATTTGTCTCCCCTCATGGGCCAGGAATTAGCTGATGTATTGCGTGGTTCAGTCGGACAACTGGGCAGTCTAATTAAGGTCATATCAGAAAATACGGGAATCAGTGAAGAGCAGGCAGCAGCTGTTGGCCTTCTAGCTGATCTGCCTGAGAGGGATTTGGGGCTCACAAGACAGATGCTAGATGAAGGTGCCTTTCAGCTGGTCCACTCTAGAGTGATTACCATTAGGCAGGGACAGATCAGTGGCAGTCGCTTTGTGACACCATTTCTTGAAGGGCTTGTGAAGATTCTTGCAAGGCTTACATATGTATTGGCTGATGAGCCTGATGCTATATCATTCTGCCGTGAGCATAGTCTTGCTGCGCTATTTATTGAACTGCTTCCGGCCAATGGACTTGATAATGTACAGATGGTTTCTGCAATTGCTTTGGAGAATCTGTCCCAAGAATCAAAGAATTTAACAAAATTACCTGAGATGCCATCTCCTGGTTTTTGTGCCTTAATATTTCCATGCCTTAGCAAACAGCCTGTCATAACAGGATTGTGTAGGCTCCACCGAGGGTTATGTTCATTAAAAGAAACATTTTGTCTAATTGAAGGGCAGGCAGTACGCAAGTTAGTAGCCCTACTGGACCACACAAATGTGAACGTTGTTGAGGCAGCATTGGCAGCTTTATCTACTTTGTTAGACGATGGAGTTGATATTGAACAAGGGGTGATGGTGCTTTTTGAGGCAGAGGGAATTAAGCCTATAATTGATGTGTTACTTGAGAAACGGACAGAAAATCTGAGGAGGAGGGCAGTTTGGGCAGTTGAGAGATTGTTGCGAACTGATGATATAGCCTATGAAGTTTCTGGTGATCAAAATGTTGGTACAGCACTTGTTGATGCTTTCCAGCATGGTGACTATCGAACTCGACAGATTGCTGAGCGTGCTCTCAAGCATGTGGACAAGATTCCAAACTTCTCTGGAATTTTTCCAAACATGGGATAG 2613 0.4332 MIRSCPANLDLECRWGQWRNSILIFVFNCEKSRVFKRPLLLLTSWERLLDMMASSWDGSNDPGSQSDESYHFERMHIEPIYDAFVCPLTKQVMRDPVTLETGQTFEREAIEKWFKECKESGRKLVCPLTLKELKSTELNPSIALRNTIEEWTARNEAAQLDMARRSLNMGSPENDTLQALHYIQHICQRSRSNKHSVRSAGIIPMIFDMLKSSSRKVRCMALGTLRIVVEEDNENKVVTGLLELLTEGDTVRTIVKFLSHELSKEREEAVSLLYELSKSETLCEKIGSINGAILILVGMTSSKSEDILTVEKAEKTLENLEKCENNVRQMAENGRLQPLLTQLLEGPPEIKLAMAGYLGELVLNNDVKVLVAKTVGSSLINIMKSGNMQSREASLKALNQISSCDPSAKVLIEAGILSSLFNDLFAVGPNQLPMRLKEVSATILANVVNSGEDFDSIPFGPDHQTLVSEDIVHNLLHLISNTGPAIECKLLQVLVGLTGSPTTVLSVVTAIKSSGAIISLVQFIEAPQKDLRVASIKLLQNLSPLMGQELADVLRGSVGQLGSLIKVISENTGISEEQAAAVGLLADLPERDLGLTRQMLDEGAFQLVHSRVITIRQGQISGSRFVTPFLEGLVKILARLTYVLADEPDAISFCREHSLAALFIELLPANGLDNVQMVSAIALENLSQESKNLTKLPEMPSPGFCALIFPCLSKQPVITGLCRLHRGLCSLKETFCLIEGQAVRKLVALLDHTNVNVVEAALAALSTLLDDGVDIEQGVMVLFEAEGIKPIIDVLLEKRTENLRRRAVWAVERLLRTDDIAYEVSGDQNVGTALVDAFQHGDYRTRQIAERALKHVDKIPNFSGIFPNMG 870
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g0016 870 Gene3D - 170 373 IPR011989 -
Lele26g0016 870 Pfam U-box domain 82 156 IPR003613 GO:0004842|GO:0016567
Lele26g0016 870 Gene3D - 634 860 IPR011989 -
Lele26g0016 870 SMART arm_5 404 449 IPR000225 GO:0005515
Lele26g0016 870 SMART arm_5 323 363 IPR000225 GO:0005515
Lele26g0016 870 SMART arm_5 774 816 IPR000225 GO:0005515
Lele26g0016 870 SMART arm_5 647 688 IPR000225 GO:0005515
Lele26g0016 870 SMART arm_5 729 770 IPR000225 GO:0005515
Lele26g0016 870 SMART arm_5 190 230 IPR000225 GO:0005515
Lele26g0016 870 SUPERFAMILY RING/U-box 73 161 - -
Lele26g0016 870 ProSiteProfiles U-box domain profile. 79 158 IPR003613 GO:0004842|GO:0016567
Lele26g0016 870 Coils Coil 310 333 - -
Lele26g0016 870 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 66 866 - -
Lele26g0016 870 Gene3D - 374 543 IPR011989 -
Lele26g0016 870 CDD RING-Ubox_PUB 84 129 IPR045210 -
Lele26g0016 870 SUPERFAMILY ARM repeat 510 858 IPR016024 -
Lele26g0016 870 SMART Ubox_2 83 151 IPR003613 GO:0004842|GO:0016567
Lele26g0016 870 SUPERFAMILY ARM repeat 171 501 IPR016024 -
Lele26g0016 870 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 65 166 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g0016 Lele-ChrLele26 83988 88546 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g0016 53 870 U-box Gene Family AT1G76390 64.146 0.0 1016