Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele26g0009 ATGGATAGGCGTAGCAATCACTGGCAACTGCAAGAAACAGCCTGCAAAAGTGCTTCTTCTCTTCTGTTAGGGTTATCTATTCATCCATCGCATATATCGGAGGGGCCGTTTCCTTCGCTTCGACCATGGAGACTTCTCTCAGATTTATCAGCAACCCTTGGTGTAGGATTGCAATATGATAAATATGACAAGCTGTGGTATAGTGTACGTGGAAAGAAAACATTCCCATTGACAAATGATGGATTTCTGAGCTTTAAGATTAAGGGACGATCTGATATTGATAAACAGTTTAAAGAGAGGAAGTCCAGAGGAGCCGCTGAGTTTTCGTGGAGCATTTTCAATTTTCAGAAGGATCAAGATGTAAGACTTAGAGTTGGCTACGAGGTCCTTGAGCAGGTTCCTTATATGCAGATCAGGGAGAACAACTGGGCTATTAACGTCGACTATAAAGGTTTTGTTTTTGAGACTGTGTATCTGATTGCATACAATTACAAGCAAGTCCAATCTGACACATTGTTGCTCTATGTGGATCTTTCTCCATTGCTTGGTCTTGTGTGGCTTTGTGGGATGGTGTCCTTCAACTTCCAACTCTATTCGAACAAGACCAAGGATGGAGGAGGCCTCCTCGCCGTCGCCCGCTGCGCTTGCTTCCGCCGCTTCCCTCCTCCTCCCCCTCCTCGCGCCAATAAAGGCATCAAGAAAAAGACTCTCCGCTCTCTTCCAAAGCTCACAATCACTCCGGAATCAGCTGTCACTTATACCGATTGCGCGATCTGCCTCAGTGACCTCACCGGCGGCGACGAAATACGAGTGCTTCCTCAGTGTGGCCATGGCTTCCATGTATCCTGCATCCTGCCCTTCTGTCGTCAGATTCTGTCGGTTAGTAGGTGCCACAAGTGTGGTGAATTCCAGGGTGATTCTAGCACGCCGGCTGAATTGGAGGAGGTTATAGAGTTTGTGAGGGAATTAGGGCAGCTTCTTCAGTGCTTGGAGTCAAAGAAGAGGAGGAGGAGGTTACTGGGAGAAGCTCATTCAAGGCAAGTTGGGGATTCTTCTGCTGCAATACAGACGCAGCAACAAGCCCCATTTTTTCCCAGCTTTGGCGCCTTTGCGAAGACGGAGGAGGGTGATGATGATGCAGGTGGTGACTTGGCAGCCATATCAACACTTTTTTTCCCGTAG 1182 0.478 MDRRSNHWQLQETACKSASSLLLGLSIHPSHISEGPFPSLRPWRLLSDLSATLGVGLQYDKYDKLWYSVRGKKTFPLTNDGFLSFKIKGRSDIDKQFKERKSRGAAEFSWSIFNFQKDQDVRLRVGYEVLEQVPYMQIRENNWAINVDYKGFVFETVYLIAYNYKQVQSDTLLLYVDLSPLLGLVWLCGMVSFNFQLYSNKTKDGGGLLAVARCACFRRFPPPPPPRANKGIKKKTLRSLPKLTITPESAVTYTDCAICLSDLTGGDEIRVLPQCGHGFHVSCILPFCRQILSVSRCHKCGEFQGDSSTPAELEEVIEFVRELGQLLQCLESKKRRRRLLGEAHSRQVGDSSAAIQTQQQAPFFPSFGAFAKTEEGDDDAGGDLAAISTLFFP 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele26g0009 393 Pfam RING-like zinc finger 255 284 IPR001841 -
Lele26g0009 393 SMART ring_2 256 300 IPR001841 -
Lele26g0009 393 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 225 303 IPR013083 -
Lele26g0009 393 ProSiteProfiles Zinc finger RING-type profile. 256 300 IPR001841 -
Lele26g0009 393 PANTHER OUTER ENVELOPE PORE PROTEIN 21B, CHLOROPLASTIC 46 151 IPR034575 GO:0008308|GO:0044070
Lele26g0009 393 SUPERFAMILY RING/U-box 236 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele26g0009 Lele-ChrLele26 49988 56431 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele26g0009 207 300 C3H Transcription Factor Family AT1G76410 57.018 2.02e-33 121