Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g2060 ATGACCCCAGTACCGTCAAAAAAGCGAATTTCCCTTCTCTCCTCCGCTTCCAACCCTAGCTCGTGTCTCCCAAAACGCGAATCCACCGCCATGGCTAAGAAGCGAAAGCTTCGATCATCTGAACCCGAATCAGCCAAGATCTCGGATTCACAACCTGCACAACAAGAACAACCCCAAGAACAGCAAATCCACGAGGAAGTTAGGGAGGACGAGCAACCAAAGCCTGAAGCAACCCTAGAAGAAGAGCACCAGGGACATGAAACGATGGCCGTGGATGATGATACGCATCAGGAAGATGTAAAATTAGAAGGAAACGAGGATGTAAGTGCACCTCCAGAAGTTCACCCTCAAGAGCAGGATAGCGAGCACCCCGAAACGGCGGAAGCTGCAGCTGATGCGGCGCCATCTGAATCAGCTCAGGCTGATGCGAATGGAGCCGAGGTTGGAAATGAGAACGATGATGATGTCGAGGTTTTGGACGAAGAGGAGCCTTTGGAGAAGCTTATTGAGCCTTTTACGAAGGAGCAGCTGTACACTCTTGTCAAGCAAGCTGCAGAGAAGTACCCAGATTTTATCGACAACGTCCGTCAACTGGCGGACGTGGACCCCGCCCACAGAAAAATCTTCATCCACGGTCTTGGCTGGGACACTACTGCTGAAACCCTCACGAGTGTTTTTGGGAAATATGGCGAGATTGAGGATTGCAAGGCTGTCATCGATAGGGTCTCTGGGAAATCAAAAGGTTATGCCTTCATCCTGTTCAAGCATCGAAGTGGGGCTCGGAAGGCGCTGAAACAACCACAGAAAAAGATCGGGAACCGAACCACATCGTGTCAATTAGCATCCGCGGGACCGGTCCCCTCTCCTGCTGCAGTGGCCCCGCCGGTATCTGAATATACTCAAAGGAAGATCTTTGTTAGCAATGTAAGTGCAGAAATCGATACCCAAAAATTGCTTGAGTTCTTCGGTCAATTTGGGGAGATAGAGGATGGTCCTTTGGGTCTTGATAAACAGACGGGCAAGCCAAAGGGATTTGCATTGTTTGTATACAAGTCAGTAGAAAGTGCAAAGAAGGCTTTGGAAGAACCGCACAAAAATTTTGAAGGGCATACACTGTATTGTCAGAAGGCTGTTGATGGTCCTAAGGGAAACAAGGGATATCAGCATCACCAGCAGCAGCATCATTCTCATCATCATCAACCTCACTACCAGCCAAGAAAAGAGAAGAATAAGTATCAGTCTGGCGGGCATGGACCTGGACCCGGACACCTGATGGCACCCTCAGCTCCTTCTGTAGGTTTCAATCCTGGAGTGGCTGCACAGGGGCTAAATCCAGCCCTTGGTCAGGCCTTGACTGCTTTGCTTACTACCCAAGGTACTGGGCTAGGGCTGGGTAACCTGCTTGGAGGTCTTGGTGGTGCACCCTCAAACCAGGCTGGGCCTCCTGCTGGATATGTCAATCAGCCTGCTGTGGGCTACGGGAACCAGCCAGGAATGCAAGGGGGATACCAAAATCCGCAAATGGGGCAGAGCGGTGGTGTTAGGCCTCATCCTGGCCCTGGCGCTCCTTACATGGGTCATTAG 1584 0.5101 MTPVPSKKRISLLSSASNPSSCLPKRESTAMAKKRKLRSSEPESAKISDSQPAQQEQPQEQQIHEEVREDEQPKPEATLEEEHQGHETMAVDDDTHQEDVKLEGNEDVSAPPEVHPQEQDSEHPETAEAAADAAPSESAQADANGAEVGNENDDDVEVLDEEEPLEKLIEPFTKEQLYTLVKQAAEKYPDFIDNVRQLADVDPAHRKIFIHGLGWDTTAETLTSVFGKYGEIEDCKAVIDRVSGKSKGYAFILFKHRSGARKALKQPQKKIGNRTTSCQLASAGPVPSPAAVAPPVSEYTQRKIFVSNVSAEIDTQKLLEFFGQFGEIEDGPLGLDKQTGKPKGFALFVYKSVESAKKALEEPHKNFEGHTLYCQKAVDGPKGNKGYQHHQQQHHSHHHQPHYQPRKEKNKYQSGGHGPGPGHLMAPSAPSVGFNPGVAAQGLNPALGQALTALLTTQGTGLGLGNLLGGLGGAPSNQAGPPAGYVNQPAVGYGNQPGMQGGYQNPQMGQSGGVRPHPGPGAPYMGH 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g2060 527 CDD RRM_RBM24_RBM38_like 302 377 - -
Lele25g2060 527 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 302 380 IPR000504 GO:0003723
Lele25g2060 527 MobiDBLite consensus disorder prediction 7 25 - -
Lele25g2060 527 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 304 372 IPR000504 GO:0003723
Lele25g2060 527 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 208 275 IPR000504 GO:0003723
Lele25g2060 527 MobiDBLite consensus disorder prediction 497 527 - -
Lele25g2060 527 SMART rrm1_1 303 375 IPR000504 GO:0003723
Lele25g2060 527 SMART rrm1_1 207 279 IPR000504 GO:0003723
Lele25g2060 527 CDD RRM_RBM24_RBM38_like 206 281 - -
Lele25g2060 527 SUPERFAMILY RNA-binding domain, RBD 288 401 IPR035979 GO:0003676
Lele25g2060 527 MobiDBLite consensus disorder prediction 1 153 - -
Lele25g2060 527 MobiDBLite consensus disorder prediction 388 405 - -
Lele25g2060 527 MobiDBLite consensus disorder prediction 44 60 - -
Lele25g2060 527 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 95 382 - -
Lele25g2060 527 MobiDBLite consensus disorder prediction 378 430 - -
Lele25g2060 527 MobiDBLite consensus disorder prediction 28 43 - -
Lele25g2060 527 Gene3D - 112 288 IPR012677 -
Lele25g2060 527 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 206 283 IPR000504 GO:0003723
Lele25g2060 527 SUPERFAMILY RNA-binding domain, RBD 195 284 IPR035979 GO:0003676
Lele25g2060 527 MobiDBLite consensus disorder prediction 61 108 - -
Lele25g2060 527 Gene3D - 289 420 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g2060 Lele-ChrLele25 27920710 27923954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g2060 281 381 C2H2 Transcription Factor Family AT2G19380 28.713 6.91e-09 56.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g2060 25 27920710 27923954 Lele01g1622 01 11265780 11266607 CCT
Lele25g2060 25 27920710 27923954 Lele02g1981 02 23449674 23452589 CCT
Lele25g2060 25 27920710 27923954 Lele03g1614 03 10539437 10540264 CCT
Lele25g2060 25 27920710 27923954 Lele04g1930 04 23800479 23801306 CCT
Lele25g2060 25 27920710 27923954 Lele27g0016 27 144244 151305 hybridization
Lele25g2060 25 27920710 27923954 Lele28g2113 28 23995543 23997036 hybridization