LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele25g2027	ATGGATTTTGAACTGCGAAGAGCGAGAGAGAAACTAGAGAGAGAGCAGAAGGATAGGAAGGAGAGGGCTCGGTTGAAATTGGAGAGGGAAAGGAAGGCTAAACAAGAGGCTAAGATTCAAAGGGATGCCATTGAAGCTGTTCAAAGATCTCGCCGTATTGATGCAGCCGAAGCCCAACTAAAGGTTGAGGAACAGATGCAAGAAAGCTTACTTGCTGGAAGAGGAATTGTGTTTTACCGTTTATTACAAGCTGTACCTTGTCAAGGTAATGGTGATAAGATCAAACTGCCACCTTCATGCTTCACAGAATTGTCTGATCAGGGTGCCCTTGATAAAGGACCCATGTACTTTCAGTTGTCAATAGTTCATGAGGAGGGTTCTTCAGGCACGAAAGCTACTGAGGAAGAGAACCCAGGGACCACCCATTCAGGGGTCTTAGAATTCACTGCTGATGAAGGTTCAGTAGGTCTTCCTCCTCATGTATGGAATAATTTGTTTGCTAACATCACCCCTAGGTCTCCATTAGTTGAGGTCCGCTATGTTGGGCTTTCAAAGGGAACTTATGCAAAACTTCAACCTGAAAGGGTAGGATTTTCTGATTTGCCAAATCATAAGGCTATCCTTGAAACAAGTCTTCGGCAACATGCAACTCTTTCTCAAGGTGATATTTTAACAGTCAACTATGGGGAACTTGCATACAAATTGAGGGTTCTTGAATTGAAACCTTCTTCAAGTGTATCTGTCTTGGAAACAGATATCGAAGTTGACATTGTCAATCCTGATACAAGCTCAGAAAAGAGAGATCAGCATGTTTTACTTCCGCTTGAATTTGGGGTGTCACAATATGGAATGGTGGATGAAGGAAATTTTGTATACTACAAATTCTCAATAGAAAATGGCAACTGGGAGAAAATCGTTTCTGAGAATTCCAGTATTGAGGTAAAATTGGAAGCTGAGACAGGTAGCGGAGACACTGATCTTTTTATATCTAGACATCCTCTGATATTTCCTACTCGACACCAGCATGAGTGGTCATCCCATGATGTTGGTTCCAAGGCTTTGTTTCTTAGCTCTAAAGATAAGAACTTTGGGACTGGGACGTACAGCATTGGAGTATTTGGATTTAAGGGAACAACCAAATTCAAAATATCAGTGGCAATTCAGGAAATTTCCCACCAAAAAATTGGTCAACAAGCATCATCGTCTATGTCACATATGGAGACAGACACTGAACAGTGCCGGAATTGCAGGCATTACATACCTAGTGGGACTATTGCATTGCATGAAGCTTACTGTCGCAGACATAATGTTATATGTCAACATGCTGGTTGTGGAGTTGTTCTTAGGATTGAGGAGTCCAAGAACCACATTCACTGTGACAGGTGCGGTAAAGCTTTTCAGCAGGGAGAATTGGAAAAGCACATGAAGGTTTTCCACGAACCTCTTCACTGTCCTTGTGCTGTAGTCCTTGAGAAAGAACAAATGGTTGAACACCAAGCTTCAGAGTGTCCCCTGCGTTTAATTTCATGTCGCTTTTGTGGTGACATGGTTCAAGCAGGAAGCTCTGCTGTTGAGATCCGTGACAAGATTAGAGGGTTAACTGAACATGAGAGCGTTTGTGGCTCAAGGACAGCCCCATGTGATTCTTGCGGGCGTTCAGTGATGTTGAAGGACATGGACATTCACCAGATTGCGGTTCATCAACGAGGCTAA	1713	0.4297	MDFELRRAREKLEREQKDRKERARLKLERERKAKQEAKIQRDAIEAVQRSRRIDAAEAQLKVEEQMQESLLAGRGIVFYRLLQAVPCQGNGDKIKLPPSCFTELSDQGALDKGPMYFQLSIVHEEGSSGTKATEEENPGTTHSGVLEFTADEGSVGLPPHVWNNLFANITPRSPLVEVRYVGLSKGTYAKLQPERVGFSDLPNHKAILETSLRQHATLSQGDILTVNYGELAYKLRVLELKPSSSVSVLETDIEVDIVNPDTSSEKRDQHVLLPLEFGVSQYGMVDEGNFVYYKFSIENGNWEKIVSENSSIEVKLEAETGSGDTDLFISRHPLIFPTRHQHEWSSHDVGSKALFLSSKDKNFGTGTYSIGVFGFKGTTKFKISVAIQEISHQKIGQQASSSMSHMETDTEQCRNCRHYIPSGTIALHEAYCRRHNVICQHAGCGVVLRIEESKNHIHCDRCGKAFQQGELEKHMKVFHEPLHCPCAVVLEKEQMVEHQASECPLRLISCRFCGDMVQAGSSAVEIRDKIRGLTEHESVCGSRTAPCDSCGRSVMLKDMDIHQIAVHQRG	570

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele25g2027	570	Gene3D	-	277	386	-	-
	Lele25g2027	570	Gene3D	-	185	258	-	-
	Lele25g2027	570	Gene3D	-	77	183	IPR042299	-
	Lele25g2027	570	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	478	529	IPR013083	-
	Lele25g2027	570	Pfam	Ubiquitin fusion degradation protein UFD1	90	260	IPR004854	GO:0006511
	Lele25g2027	570	MobiDBLite	consensus disorder prediction	1	20	-	-
	Lele25g2027	570	Coils	Coil	5	47	-	-
	Lele25g2027	570	PANTHER	UBIQUITIN FUSION DEGRADATON PROTEIN 1	22	515	IPR004854	GO:0006511

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele25g2027	Lele-ChrLele25	27687457	27691241	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	C2H2	Lele25g2027		UFD1	1.5e-47	CL0402