LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele25g2023	ATGTCGGATGACATGCTTGTGCATTTCTCTTCCAATTCATCCAACCAATCGGATCAGTCCTTGCCTACCAAGATTGCAAAGCTTGAAGCTCGAATGGTCGGCAAGGCTTCGCCCGCAGTTGCCACCACTCCGTCATCTGTTCAGCAGTCAACTTGGTCTTCTGTTCCTTCAGCTGCGAAATTTGGGGGACCTGCCGAGGATCTGGCTGGACCCTCCACCTCGAGTGATTCCGATGATGATAACGGTGGGGAATTCCTTATACAAGCTAACACACAGAAGCGCCAAAAACTTCCAAAAGATGACCACTCAAAGATTTTTGAACATGTTGAGGTAGTTACCGATGGAAGGCAGACTAGTTTGGATGCTGTGGAGGCAAAAGTTAGTGCTGATGTGAATAGGAAAAAAAATGGTCGTGGAAGAGGGAGTTCTGGTACTGGTAGGGGACGTGGTTCCAGAGTTACCGATCAGACCAGAACACAAATTTCTCCTCCAGCAGTTTTGGCCTCCAATGGTCAGCTTGACAATGCATGCCATAGGGAGGGAAGACTCAAAGATCAGATTCGCAGTGACAATGGCACCTCATTAGAGGAGGAGAATGCGTCTTTGCGTGCAAAATTTGTTGCATTGGAGGAGGACCTGCGGAAATCGAAACAAGAGATGTCCGATTATCAGAACCTTTGTCGCCAATTAGAAAAGGAACTAAAGGACCTGAAAGATCACGAACAGCAAATGAAGCCCAAGAGGACAAAAATAATATCTGATTTGCTTATATCAGTTTCAAAGTCTGAGAGGCAAGAAGCACGGTTGAAAGTACGGCAAGACTCATTGAGACTGGGGAATGTTGGTGTAGTAAGAGCGGGAACTGTCATATCTGAGACTTGGGAAGATGGGCAAGCATTGAAGGATCTTAATGCCCAACTTAAACAACTCATAGAAACGAAAGAGGCTATTGAGCGGCAACGCAAGTTATTGAAGAAAAAACAATCTGATAAAGGTGAGGGAACAGATGCAGATACTGGATTACAAGACGACGATGTCATCATTCAAGATGAAATCTATAAGTCTCGACTAGCTAGCATTAAACGTGAAGAAGAAGTTATCATGCGGGAGAGGGATCGCTATGAACTAGAAAAGGGAAGACTGATACGTGAGATGAAACGCATACGAGATGAGGATGGTTCACGTTTTAACAACTTTCAGATTCTGAACCATCGATATGCCTTGTTAAATCTTCTTGGAAAGGGGGGATTCAGCGAGGTTTACAAGGCTTTTGACTTGGTGGAGCATAGATATGTTGCATGTAAGCTTCATGGTTTAAATGCTCAATGGAGTGAAGAGAAGAAGCAGAGTTACATTCGGCATGCAATTCGGGAGTATAATATCCACAAGACCTTGGTACACCATCACATTGTTCGTTTGTGGGACATCTTTGAGATAGATCACAATACATTCTGCACCGTTTTAGAGTACTGTAGTGGGAAGGATCTCGATGCTGTCCTTAAGGCAACACCTGTATTGCCTGAGAGAGAGGCAAGGGTAATTCTAGTTCAGGTTTTTCAAGGCCTTGTTTACCTGAATAAAAGAACGCAGAAGATTATTCATTATGATTTGAAGCCTGGAAATGTTTTGTTTGATGAGCTTGGCATTGCCAAAGTGACTGATTTTGGTCTCAGCAAAATAGTTGAGGATGATGTGGGATCCCAGGGTATGGAACTAACATCTCAAGGGGCTGGAACTTACTGGTATTTGCCACCAGAATGCTTTGAGCTCAGTAAGACACCTCTTATATCATCGAAGGTTGATGTCTGGTCTGCCGGTGTTTTGTTCTATCAAATGCTCTTTGGAAGACGTCCATTTGGCCACGACCAAACTCAAGAGCGTATACTACGAGAAGATACAATTATTAAGGCTCGTAAGGTTGAATTCCCTTCTAGACCTACGGTTTCTAATGAGGCCAAGGATTTTATACGGCGATGTCTGACATATGACCAGGCCGAGCGACCAGATGTATTGAGCATTGCTCAAGACCCATATCTTACCTACTCAAAGAAGTAA	2055	0.4394	MSDDMLVHFSSNSSNQSDQSLPTKIAKLEARMVGKASPAVATTPSSVQQSTWSSVPSAAKFGGPAEDLAGPSTSSDSDDDNGGEFLIQANTQKRQKLPKDDHSKIFEHVEVVTDGRQTSLDAVEAKVSADVNRKKNGRGRGSSGTGRGRGSRVTDQTRTQISPPAVLASNGQLDNACHREGRLKDQIRSDNGTSLEEENASLRAKFVALEEDLRKSKQEMSDYQNLCRQLEKELKDLKDHEQQMKPKRTKIISDLLISVSKSERQEARLKVRQDSLRLGNVGVVRAGTVISETWEDGQALKDLNAQLKQLIETKEAIERQRKLLKKKQSDKGEGTDADTGLQDDDVIIQDEIYKSRLASIKREEEVIMRERDRYELEKGRLIREMKRIRDEDGSRFNNFQILNHRYALLNLLGKGGFSEVYKAFDLVEHRYVACKLHGLNAQWSEEKKQSYIRHAIREYNIHKTLVHHHIVRLWDIFEIDHNTFCTVLEYCSGKDLDAVLKATPVLPEREARVILVQVFQGLVYLNKRTQKIIHYDLKPGNVLFDELGIAKVTDFGLSKIVEDDVGSQGMELTSQGAGTYWYLPPECFELSKTPLISSKVDVWSAGVLFYQMLFGRRPFGHDQTQERILREDTIIKARKVEFPSRPTVSNEAKDFIRRCLTYDQAERPDVLSIAQDPYLTYSKK	684

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele25g2023	684	Coils	Coil	300	330	-	-
	Lele25g2023	684	SMART	serkin_6	406	679	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele25g2023	684	ProSitePatterns	Protein kinases ATP-binding region signature.	412	435	IPR017441	GO:0005524
	Lele25g2023	684	Pfam	Protein kinase domain	407	679	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Lele25g2023	684	CDD	STKc_TLK	405	678	-	-
	Lele25g2023	684	MobiDBLite	consensus disorder prediction	1	23	-	-
	Lele25g2023	684	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	532	544	IPR008271	GO:0004672\|GO:0006468
	Lele25g2023	684	MobiDBLite	consensus disorder prediction	124	160	-	-
	Lele25g2023	684	SUPERFAMILY	Protein kinase-like (PK-like)	398	680	IPR011009	-
	Lele25g2023	684	Gene3D	Transferase(Phosphotransferase) domain 1	397	684	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele25g2023	Lele-ChrLele25	27643513	27650120	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele25g2023	389	684	MAP Kinase Kinase Kinase	AT3G13530	28.094	1.79e-28	120

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	TLK	Lele25g2023		Pkinase	8.3e-60	CL0016

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