Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1965 ATGTATTTTGATAGACACAATGATAATGCTAGGCAGCTAGAGTTCCATTGTTCATTATGGTTTGTTGCCTGATTTTCAACTCTAGTGTCTGGCAAAATTGTTGGTTCTTCTTCTGATCGGGAATTGCTTGGAAGAAAAACCCACAAAGCCGTGTATGTGAAATCTTTGGAGAAGCAAGGTTCCATATATGGTGCTAGAGCAAGCTTGGCTGGTTCCATTGACAATGGAGGAGTCCCAATAAAGCTAGATTTCGAAGTTAAGCTGTGCTATAAAATGCAATCCGACAATGGCAAGTTATTTATTGGTGGGATATCATGGGACACAAATGAAGAGCGGCTTAGAGAGTATTTCAATTCTTATGGGGAGATTGTGGAAGCAGTGATTATGAAGGATCGGACAACAGGTAGAGCCCGTGGATTCGGTTTTGTAGTTTTTGCAGACCCAACTGTTGCAGATAGAGTCATAAAAGAGAAGCACAACATTGATGGAAGGATGGTTGAGGCCAAGAAGGCTGTTCCAAGGGATGACCAGAGCATACTGAGTAGAAACAGTGGTAGCAACCATGGTTCTCCTGGTCCAGGCCGCACAAAGAAGATATTTGTTGGTGGTTTGGCTTCTACAGTTACAGAGAGTGATTTTAAGAAGTACTTTGATCAATTTGGGACAATAACAGATGTTGTAGTTATGTACGATCACAACACTCAGAGGCCAAGAGGCTTTGGATTTATCACTTATGATTCTGAAGAAGCTGTTGAGAAGGTCTTACTTAAGACCTTCCATGAACTGAATGGTAAAATGGTTGAGGTCAAGCATGCAGTTCCTAAGGAACTATCACCTGGGCCAAACCGTAGCCCACTCACTGGATATAACTATGGTATGAATAGGATCAATAGTTTCCTAACTGGCTTCACCCAGGGCTATACTCCAGGTGCTGTTGGAGGCTTTGGACTCAGGGTGGACGGTAGATTCAGTCCTGTTGCAGGTGGCCGAAGTGGGTTTTCGCCATTTGGATCTGGTTATGGAATGAATATGAATTTTGAGCCTGGTTTGAGCCCTAGATTTGGAGGGAATGCAAATTTGAATAACAATCTTAGTTATGGTCGGGGAATAAATCCATATTATATCAGAAACTCAAGTAGATTTGGGAGTCCTATTGGGTATGATGGTAATAATGGAGGAAACAATTCTTTCTTCAGCTCTGTAGCTCGGAACTTGTGGGGAACTGGTAACCTTAATTATGGAACAAGTTCTGCTAATTCCAGTGCACACACTGGATCAGGAAGTGGGAATGTTGGAGGAAATATTTATGGCAATGCTAGAGTCAATTGGGGTTCTTCAGCAATTTCTGCTCAAGGTACAATGAACAATGCATCCCAAAGTAGTGGTGGTGACCTTGGCTTTGGGGGAGACGATAATGGTTATGGTTTGGGAACTGGAGGATATGGAAGAAACACTGGTACCAATATTGCTCCAACATCATCCCACTCTGCATCAAATGGTGGTTTTGATGGAGCTTTTGCTGATTTATACAATAATAGTTCAGTTTACGGTGACCCCACTTGGCGGTCCTCAAATTCTGAGCTAGATGGATCTGGTTCCTTTGGTTATGGGTTTGGTGCTGCAGCTTCAGATGTTTCTGCTAAAAGCTCTCCTGGTTATGTTGGTGGTTATACTGTTAATAAGAGACAGCCAAATAGGGGAATTGCTACATAG 1713 0.425 MYFDRHNDNARQLEFHCSLWFVAXFSTLVSGKIVGSSSDRELLGRKTHKAVYVKSLEKQGSIYGARASLAGSIDNGGVPIKLDFEVKLCYKMQSDNGKLFIGGISWDTNEERLREYFNSYGEIVEAVIMKDRTTGRARGFGFVVFADPTVADRVIKEKHNIDGRMVEAKKAVPRDDQSILSRNSGSNHGSPGPGRTKKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKHAVPKELSPGPNRSPLTGYNYGMNRINSFLTGFTQGYTPGAVGGFGLRVDGRFSPVAGGRSGFSPFGSGYGMNMNFEPGLSPRFGGNANLNNNLSYGRGINPYYIRNSSRFGSPIGYDGNNGGNNSFFSSVARNLWGTGNLNYGTSSANSSAHTGSGSGNVGGNIYGNARVNWGSSAISAQGTMNNASQSSGGDLGFGGDDNGYGLGTGGYGRNTGTNIAPTSSHSASNGGFDGAFADLYNNSSVYGDPTWRSSNSELDGSGSFGYGFGAAASDVSAKSSPGYVGGYTVNKRQPNRGIAT 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1965 570 FunFam Heterogeneous nuclear ribonucleoprotein 1 194 281 - -
Lele25g1965 570 MobiDBLite consensus disorder prediction 177 191 - -
Lele25g1965 570 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 173 IPR000504 GO:0003723
Lele25g1965 570 MobiDBLite consensus disorder prediction 481 497 - -
Lele25g1965 570 Gene3D - 194 280 IPR012677 -
Lele25g1965 570 SMART rrm1_1 98 169 IPR000504 GO:0003723
Lele25g1965 570 SMART rrm1_1 198 270 IPR000504 GO:0003723
Lele25g1965 570 FunFam Heterogeneous nuclear ribonucleoprotein 1 96 178 - -
Lele25g1965 570 Gene3D - 95 179 IPR012677 -
Lele25g1965 570 CDD RRM2_DAZAP1 195 274 IPR034131 GO:0003723
Lele25g1965 570 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 197 274 IPR000504 GO:0003723
Lele25g1965 570 SUPERFAMILY RNA-binding domain, RBD 93 195 IPR035979 GO:0003676
Lele25g1965 570 MobiDBLite consensus disorder prediction 550 570 - -
Lele25g1965 570 SUPERFAMILY RNA-binding domain, RBD 195 294 IPR035979 GO:0003676
Lele25g1965 570 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 92 566 - -
Lele25g1965 570 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 199 256 IPR000504 GO:0003723
Lele25g1965 570 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 160 IPR000504 GO:0003723
Lele25g1965 570 CDD RRM1_hnRNPA_hnRNPD_like 99 169 - -
Lele25g1965 570 MobiDBLite consensus disorder prediction 476 497 - -
Lele25g1965 570 MobiDBLite consensus disorder prediction 176 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1965 Lele-ChrLele25 27209462 27218549 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1965 99 276 Eukaryotic Initiation Factors Gene Family AT2G36660 31.746 1.75e-14 74.7