Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1964 ATGCAATCGGATAATGGCAAGTTATTTATTGGTGGAATATCATGGGACACAAATGAAGAGCGACTTAGGGAGTATTTCAGTTCTTATGGGGAGATCGTGGAAGCAGTGATAATGAAGGATCGGACAACTGGTAGAGCTCGTGGATTTGGTTTTGTAGTTTTTTCTGACCCCGCTGTTGCAGATAGAGTTATAAAAGAGAAGCACAACATTGAGGGAAGGATGGTTGAGGCAAAGAAGGCTGTTCCTAGAGATGACCAGACCATATTGAACAGAAACAGTAGTAGCAGCCAGGGTTCTCCTGGTCCAGGCCGCACAAGAAAGATATTTGTAGGAGGTTTAGCATCAACAGTTACAGAGAGTGATTTCAAGAAATACTTTGATCAATTCGGGACAATAACAGATGTTGTAGTAATGTATGATCACAATACTCAGAGGCCAAGAGGCTTCGGATTTATCACTTATGATTCCGAAGAAGCTGTTGAGAAGGTCTTACTTAAGACATTTCATGAACTGAATGGTAAAATGGTTGAGGTCAAGCGGGCAGTTCCTAAGGAATTGTCACCAGGACCAAACCGCAGCCCAATCAGTGGATATAATTATGGTATGGGTAGGGTCAATAGTTTCCTAAATGGCTTCACTCTTGGGTATACTCCAAGTGCTGTTGGAGGCTACGGACTGAGGATGGATGGTAGATTCAGTCCTGTTGCAGGTGGTCGAAGTGGATTTGCTCCATTTGGATCTGATTATGGAATGGGTATGAATTTTGAGGTTGGCTTGAACCCTGGATTTGGAGGGAATGCAAACTTCAATAGCAATCTTACCTATGCTCGGGGGTTAAATCCTTATTATGCTGGCAGCTCAAATAGGTTTGGGAGTCCTATTGGGTATGATGGTGGTAATGGAGGAAACAATTCTTTCTTCAGCTCTGTGACTCGAAACTTGTGGGGGACTGGTGGTCTTAATTATGGAACAGGCTCTGCAAATTCCAATAATGCGTACATGGGATTGGGAAGTGGGAATGCTGGAGGAAACTCATTTGGGACTGGAGTGAACTGGGGCTCTTCAGGAGTTTCTGGTCAAGGTGCTTTGAACAATTTGTCACAGAGTAGTGGCAACCTTCGCTACGCAGGTGGTAACAATGGTTATGGTTTGGGTGCTGGAGGGTATGGAGGGACCGGTGGTAGCAGTATTGGCCCAACGTCCTCGTACTCCTCATCAAATGGTGTGTTTGATGGGGCCTTTACTGATTTTTACAATAATAGTTCAGTTTATGGGGATCCCACTTGGCGATCTTCAAATTCTGAGCGAGATGGGTCTGGTCCCTTTGGATATGGTCTTGGTAGCGCAGCTTCAGATGTTTCTGCCAAAAGCTCTCCTAGTTATGTTGGTGGTTATACTGTTAATAAGAGACAGCCAAATAGAGGTAAGAGCTATTGTAATTACATTTTCTTGATTATTCTCTTTCTTCCTCCTCCAGAAACACTTGTGTGGCTTCAATGGATAGGAGGAAAATAG 1515 0.4383 MQSDNGKLFIGGISWDTNEERLREYFSSYGEIVEAVIMKDRTTGRARGFGFVVFSDPAVADRVIKEKHNIEGRMVEAKKAVPRDDQTILNRNSSSSQGSPGPGRTRKIFVGGLASTVTESDFKKYFDQFGTITDVVVMYDHNTQRPRGFGFITYDSEEAVEKVLLKTFHELNGKMVEVKRAVPKELSPGPNRSPISGYNYGMGRVNSFLNGFTLGYTPSAVGGYGLRMDGRFSPVAGGRSGFAPFGSDYGMGMNFEVGLNPGFGGNANFNSNLTYARGLNPYYAGSSNRFGSPIGYDGGNGGNNSFFSSVTRNLWGTGGLNYGTGSANSNNAYMGLGSGNAGGNSFGTGVNWGSSGVSGQGALNNLSQSSGNLRYAGGNNGYGLGAGGYGGTGGSSIGPTSSYSSSNGVFDGAFTDFYNNSSVYGDPTWRSSNSERDGSGPFGYGLGSAASDVSAKSSPSYVGGYTVNKRQPNRGKSYCNYIFLIILFLPPPETLVWLQWIGGK 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1964 504 SUPERFAMILY RNA-binding domain, RBD 3 104 IPR035979 GO:0003676
Lele25g1964 504 CDD RRM2_DAZAP1 104 183 IPR034131 GO:0003723
Lele25g1964 504 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Lele25g1964 504 Gene3D - 4 88 IPR012677 -
Lele25g1964 504 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 70 IPR000504 GO:0003723
Lele25g1964 504 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 165 IPR000504 GO:0003723
Lele25g1964 504 PANTHER RNA-BINDING PROTEIN MUSASHI HOMOLOG RBP6 1 474 - -
Lele25g1964 504 Gene3D - 103 189 IPR012677 -
Lele25g1964 504 SMART rrm1_1 7 78 IPR000504 GO:0003723
Lele25g1964 504 SMART rrm1_1 107 179 IPR000504 GO:0003723
Lele25g1964 504 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 183 IPR000504 GO:0003723
Lele25g1964 504 MobiDBLite consensus disorder prediction 82 105 - -
Lele25g1964 504 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Lele25g1964 504 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Lele25g1964 504 FunFam Heterogeneous nuclear ribonucleoprotein 1 103 190 - -
Lele25g1964 504 SUPERFAMILY RNA-binding domain, RBD 102 204 IPR035979 GO:0003676
Lele25g1964 504 MobiDBLite consensus disorder prediction 86 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1964 Lele-ChrLele25 27206249 27208010 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1964 8 185 Eukaryotic Initiation Factors Gene Family AT2G36660 31.746 8.85e-16 78.2