Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1952 ATGGATGGCTGTAAGAAGATCTTTTGTAGAATGTCAGATAGAAGAGATGAAGTCAGTTGGATTTCCATGATTTCTGGATATATACACAATGACATCCTGGACAAGGCCATGGATTTGGTATGGTTTATGATGCAAAGAGGCCAAAGATTGGATGATGTCACTGTGGCTACTGTTCTTAGTGCTTGTGCCTCAGTTTCAACCTTAGAGCGAGGTGTGGAAGTTCATGCATGTGCCATAAGAGCTTGTTTAGAATTTGACATTGTTGTTGGTAGTGCACTTGTTGACACGTATGCCAAATGCGGAAAGGTATATTATGCTTCAAGATTCTTTGAATTGATGCCTTTGAGGAACATATACACTTGGAATTCAATGATATCAGGCTATGCACGCCATGGACTTGGAGAAAAAGCTTTGAAGCTTTTCTTACGAATGAAAGAGCATGTCCAATCACCAGATCATGTGACCTTTGTTGGGGTCTTATCAGCTTGTAGTCATGTTGGTTTAGTTGATGTCGGGTTTGAGCACTTCAAATCAATGAGTGAAGTATATGGACTAGCTCCTCGAATTGAGCATTTCTGTTGTATGGTTGATCTCCTTGGGAGAGCTGGTGATGTTAATAAGACAGAGAACTTGATCAACACCATGCCAATGGATCTTAATATGGAGCCACAGAATGCTGTGAACTATGTGCTTCTTTCTAACATGCATGCTGCGGGTGGGAAGTGGGAAGCTGTGGCAGATGCTAGGATGGCAATGCGAAAGGCATCAGTGAAGAAAGAAGTAGGGTATAGTTGGGTCATCATGAAGGATGGTGTTCATGTATTCGTGACCGGAGATAAAAAACACCCAGAGAAAGAAAAAATTTATGAAAAACTCAAGGAACTAACTAGGAAAATGAGGGATGCTGGTTATGTTCCAGAAACCAAATATGAGCTGTTTGATCTTGACCCTGAAAGCAAAGAAGGAATCTTGACCCATCATAGTGAAAAATTAGCAGTTGCTTTTGTTCTTACCCGGAAATCTGAACTACCAATTAGGATAATGAAAAATCTTCGTGTTTGTGGTGACTGCCACACTGCTTTCAATGATAAGCAGATGGTAACATACCTTAAGTGCAGAAGGGAGAGAGATGCTGAAGCGAGTTTGATCATTTTCCTTTCTGGGTACCCTACTTGTGAAGTAGAGGAAATGAAACCATCAAATAACATATGGATTCAGCGCCAACAATGTCCGTGTGGAGATTGGAAGTGTTTTATCAAGTATGATGGAGATGATCAGATATCCGCAAGATCTCAGGCCACAAAGACTGATACAGTGCCTTCATCTTCATCAGAAGCTGTCTTCACTCCTTATGTAGGTCAAATATTCAAAAGCGATGATGATGCATTTGAATGCTATAGCAATTTTGCCCGGAAGAATGGATTTTCAATCAGAAAAGCTCGCTCAACTGAAAGCCAACATTTAGGAATATATAGAAGAGATTTTGTTTGTTACAGATCTGGGTTTAATCAGCCAAGAAAAAAGGCCAATGTGGAGCATCACAGAGAGCGAAAATCTGTACGATGTGGATGTGATGCAAAATTATATTTGACAAAGGAAATTGTTGATGGTGTTGCTCAATGGTATGTGTCACAATTTAGTAATGTTCATAACCATGAGTTGTTGGAAGATGACCAAGTACGACTTCTACCAGCATATCGTAAAATACAAGAGGCTGATCAGGAACGCATTCTTCTACTGTCCAAAGCCGGATTCCCTGTGAACCGTATTGTGAAGGTGCTAGAGCTTGAAAAAGGAGTTCAGCCTGGACAGCTGCCTTTCATAGAAAAGGATGTTAGGAATTTTGTTCGGACTTGCAAGAAAGCCGTTCAAGAAAATGATGCTTTACTGACCGAGAAAAGAGAGAATGATATGCATGAACTTGTGGAGACCTGTAAGGCAATGATAGACAAGGATCCCAATTTCATTTTTGATTATACTGCTGATGCAAATGGTAAAGTTGAAAATATAGCTTGGTCAAATGGTGAATCTATTCGGGCATATTCTGTTTTTGGTGATGTAGTTACTTTGGACACCACATACCGTTCTGTCAAGTATGGATTACTTCTTGGGGTGTGGTTCGGCATTGATAATAACGGAAATGCGATAATATTTGGGTTTGTCTTGTTACATGATGAAAGTTCTTGTTCATTTGCATGGGCTTTACAAACATTTGTACGATTTATGAGAGGGAGACATCCACAAACAATTATAACCGACATAGATCCAACTCTGGGAGATGCTATTTCCAAGGAGTTGTCTGAAACTAAACATGTTATATGCACTTGGCATATTCTATCAAAAATGTCAAATTGGTTCTCTGTACCCCTGGGACTACAGTATGGAGATTTTAGGTTAGAGTTCAATATATTATGTCACATGGAGAGCATAGAAAATTTTGAACATCAGTGGGATCTTTTTGTAGCTCGATTCGGACTAGTTTCTGACAAGCACATAGCTTTGCTATTCTCGCTTCGAGCATCTTGGCCACTCTGCTATGTTAAGAGTTATTTTGTAGCTCGTTCGTTAACAGCCGAGTTTTCTCAATTTCTGGATTCAACATTGAAAAGAATTCTAGATTCACAAACATGTCTACAAGGATTTTTTGAGCAGGTAGGTATTGTTGCCACCTCATCAATGTTGGCAAGAGAGGGGATGCATTACATGTGTGTAAAGACATGCATGCCTATTGAAGAACATGCAAGGAGTATTCTTACACCCTATGCTTTCAATGTGTTCCAAAATGAAACTGTGCTGTCAATGCAATATGCAACAACAGAACTGACCAATGGATCCTACCTTGTTCAGCACTACAAGAAAATGGATGAAGAGCGCCTCGTAATTTGGGAACCGTCTGATGAACAAATTCAATGCTCCTGCAAGGAATTTGAACATTCAGGAATATTGTGCCGGCATTCGATTCGTGTACTTACGATGAAGAACTACTTCCAACTACCTATGAAATATTTTCTTCCCCGGTGGCGACGAGAAAGTTTCTTGGCTCCTTTTGATGAACAAAATCCTCAGAGCAGTGATGAGTGTGCTCAAGCCTTTCATTCTTTGACTGCCACTCTACTGACAGAATCATTAGTCTCCAAGGAACGGTTTAATTATGTTCATAGAGAACTCACTGGGATTCTTGAGCATGTTAAGAATATGGAAGCTGTGGATGAATTTGGTATCAATGTGGCTGCTAATAATGTTAGTGACTCCTAG 3255 0.3997 MDGCKKIFCRMSDRRDEVSWISMISGYIHNDILDKAMDLVWFMMQRGQRLDDVTVATVLSACASVSTLERGVEVHACAIRACLEFDIVVGSALVDTYAKCGKVYYASRFFELMPLRNIYTWNSMISGYARHGLGEKALKLFLRMKEHVQSPDHVTFVGVLSACSHVGLVDVGFEHFKSMSEVYGLAPRIEHFCCMVDLLGRAGDVNKTENLINTMPMDLNMEPQNAVNYVLLSNMHAAGGKWEAVADARMAMRKASVKKEVGYSWVIMKDGVHVFVTGDKKHPEKEKIYEKLKELTRKMRDAGYVPETKYELFDLDPESKEGILTHHSEKLAVAFVLTRKSELPIRIMKNLRVCGDCHTAFNDKQMVTYLKCRRERDAEASLIIFLSGYPTCEVEEMKPSNNIWIQRQQCPCGDWKCFIKYDGDDQISARSQATKTDTVPSSSSEAVFTPYVGQIFKSDDDAFECYSNFARKNGFSIRKARSTESQHLGIYRRDFVCYRSGFNQPRKKANVEHHRERKSVRCGCDAKLYLTKEIVDGVAQWYVSQFSNVHNHELLEDDQVRLLPAYRKIQEADQERILLLSKAGFPVNRIVKVLELEKGVQPGQLPFIEKDVRNFVRTCKKAVQENDALLTEKRENDMHELVETCKAMIDKDPNFIFDYTADANGKVENIAWSNGESIRAYSVFGDVVTLDTTYRSVKYGLLLGVWFGIDNNGNAIIFGFVLLHDESSCSFAWALQTFVRFMRGRHPQTIITDIDPTLGDAISKELSETKHVICTWHILSKMSNWFSVPLGLQYGDFRLEFNILCHMESIENFEHQWDLFVARFGLVSDKHIALLFSLRASWPLCYVKSYFVARSLTAEFSQFLDSTLKRILDSQTCLQGFFEQVGIVATSSMLAREGMHYMCVKTCMPIEEHARSILTPYAFNVFQNETVLSMQYATTELTNGSYLVQHYKKMDEERLVIWEPSDEQIQCSCKEFEHSGILCRHSIRVLTMKNYFQLPMKYFLPRWRRESFLAPFDEQNPQSSDECAQAFHSLTATLLTESLVSKERFNYVHRELTGILEHVKNMEAVDEFGINVAANNVSDS 1084
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1952 1084 Pfam E motif 219 266 IPR046848 -
Lele25g1952 1084 Pfam SWIM zinc finger 965 994 IPR007527 GO:0008270
Lele25g1952 1084 FunFam pentatricopeptide repeat-containing protein At2g33680 90 222 - -
Lele25g1952 1084 Pfam MULE transposase domain 687 780 IPR018289 -
Lele25g1952 1084 Pfam PPR repeat 18 47 IPR002885 -
Lele25g1952 1084 Gene3D Tetratricopeptide repeat domain 135 332 IPR011990 GO:0005515
Lele25g1952 1084 ProSiteProfiles Zinc finger SWIM-type profile. 946 994 IPR007527 GO:0008270
Lele25g1952 1084 Gene3D Tetratricopeptide repeat domain 1 116 IPR011990 GO:0005515
Lele25g1952 1084 SMART 26again6 969 996 IPR006564 GO:0008270
Lele25g1952 1084 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 16 50 IPR002885 -
Lele25g1952 1084 Pfam PPR repeat family 117 164 IPR002885 -
Lele25g1952 1084 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 2 218 - -
Lele25g1952 1084 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 117 151 IPR002885 -
Lele25g1952 1084 Pfam FAR1 DNA-binding domain 465 555 IPR004330 -
Lele25g1952 1084 Pfam DYW family of nucleic acid deaminases 303 362 IPR032867 GO:0008270
Lele25g1952 1084 Pfam E+ motif 272 299 IPR046849 -
Lele25g1952 1084 TIGRFAM PPR: pentatricopeptide repeat domain 119 152 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1952 Lele-ChrLele25 27108454 27113532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1952 1 360 Glycoside Hydrolase AT3G49170 36.548 3.54e-74 261
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Lele25g1952 DYW_deaminase 8e-28 CL0109