Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1948 ATGGCGGATTCGGATAACGAATCGGGTGGGGTGAACGGAGGCAACGCGAACAGCGATCTGTCGGCGAAGGAGCAGGAAAGGTTCTTGCCGATAGCGAACGTGAGTCGGATAATGAAAAAGGCGTTGCCAGCGAACGCGAAGATCTCGAAGGACGCGAAGGAGACGGTGCAGGAGTGCGTCTCGGAGTTCATAAGCTTCGTGACGGGGGAGGCGTCGGACAAGTGCCAGAGGGAGAAGAGGAAGACGGTCAACGGCGACGATTTGCTGTGGGCCATGACCACTTTAGGGTTCGAGGATTATGTAGAGCCCTTGAAGATTTACCTTCAGAAGTATCGGGAGATGGAAGGGGAGAAGACTTCCCTTGGGAAGCACGGCGAGAAGGACGGTAGCTCCGGCGGAAGTGGGGTTGTTGGGTATAATGGCTCAGAGGGTATGTACGGTGGGATGACTGTAGGGCATCATCAGGGACAGGTGTACGGTTCTGGTGGGTTTAACCAAGGCAACGGTGGTGGTGTAGGCTCCAATATGAGATCCAGTAAACTATCTAAAGGCTGGGATGGCTGTGAAGAAGTTCTGACGAAGACAGAATGA 591 0.5415 MADSDNESGGVNGGNANSDLSAKEQERFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFVTGEASDKCQREKRKTVNGDDLLWAMTTLGFEDYVEPLKIYLQKYREMEGEKTSLGKHGEKDGSSGGSGVVGYNGSEGMYGGMTVGHHQGQVYGSGGFNQGNGGGVGSNMRSSKLSKGWDGCEEVLTKTE 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1948 196 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 28 92 IPR003958 -
Lele25g1948 196 Gene3D Histone, subunit A 17 135 IPR009072 GO:0046982
Lele25g1948 196 PRINTS CCAAT-binding transcription factor subunit A signature 75 93 - -
Lele25g1948 196 PRINTS CCAAT-binding transcription factor subunit A signature 56 74 - -
Lele25g1948 196 PRINTS CCAAT-binding transcription factor subunit A signature 94 112 - -
Lele25g1948 196 FunFam Nuclear transcription factor Y subunit B-3 17 137 - -
Lele25g1948 196 ProSitePatterns NF-YB/HAP3 subunit signature. 59 75 IPR003956 GO:0005634|GO:0006355|GO:0043565
Lele25g1948 196 MobiDBLite consensus disorder prediction 159 181 - -
Lele25g1948 196 SUPERFAMILY Histone-fold 25 134 IPR009072 GO:0046982
Lele25g1948 196 MobiDBLite consensus disorder prediction 1 22 - -
Lele25g1948 196 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 11 141 IPR027113 GO:0001228|GO:0006355|GO:0016602
Lele25g1948 196 MobiDBLite consensus disorder prediction 157 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1948 Lele-ChrLele25 27090190 27090925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1948 1 154 CCAAT-HAP3 Transcription Factor Family AT4G14540 75.472 2.10e-76 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YB Lele25g1948 CBFD_NFYB_HMF 2.4e-27 CL0012