Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1935 ATGGCTGACGCTTCAAGCACCCTTTACACCACCACCCTCCTTCCCAGTTTCAGTCCGACCAAGAAAACTCATGCGATTCAGCGTCATCTAACTCTCCCGCGAAAGCCCCAATTTCATTGTTCAATTTCTGCAAGTGATGCCACCAAAACTGCCGTTACAGAAACCATCCCATGGGGGTGCGATATTGACTCTTTGGAAAACGCATCGGCTCTGCAGAGATGGTTGTCTGACTCAGGCCTCCCGCCACAGAAGATGGCCATTGAAAGGGTGAATGTTGGGGAGAGAGGACTTGTTGCTTTGAAGAATATAAGGAAGGGAGAGAAGTTGCTCTTTGTGCCTCCTTCACTATTCATCACTGCTGATTCTGAATGGAGCTGCCCTGAAGCTGGTGAAATTTTGAAGAGGAACTCAGTGCCAGATTGGCCACTGCTTGCCACTCATCTCATCAGTGAAGCAAGCCTCATGACATCTTCAAGATGGAGCAGTTATGTTTCAGCCTTACCTCGGCAACCCTATTCACTTCTTTACTGGTCACAAGCAGAACTAGATCGTTATTTGGAAGCTTCACAGATTAGGGAGAGAGCAATTGAAAGGATTAATAATGTTATTGGAACATACAACGATTTGAGGCTCAGAATTTTTTCCAAGCATCCCAGTTTATTCCCTGAAGAGGTGTTCAACATTGATACCTTCAAGTGGTCATTTGGCATTCTTTTCTCTCGCTTGGTTCGATTACCATCAATGGATGATAAGTTTGCATTGGTTCCCTGGGCAGATATGCTGAACCATAGTTGTGATGTGGAAACGTTTTTGGATTATGATAAATCATCAAAGGGAGTTGTCTTTACTACAGATCGCCCCTACCAACCAGGTGAGCAGGTGTTTATATCGTATGGCAAGAAATCTAACGGAGAGCTTTTGCTATCTTATGGATTCGTTCCAAAGGAAGGCACAAATCCTAGTGATTCAGCTGAGTTATTGTTGTCACTCAGGAAATCTGATAAATGCTACGATGAGAAGTTACAACTCTTGAAGAAAAATGGACTGTCTGCATCACAGTGCTTCCCTGTAAAAGTTACTGGTTGGCCATTGGAGTTAATGGCATATGCTTATTTAGCTGTGAGCCCTCCAAGCATGAGAGGCAAATTTGAAGAGATGGCTGCCGCAGCATCGAATAAAACAACTGTAAAGAAGGATTTGAAATATCCTGAAATAGAAGAGCAAGCATTGCAATTTATACTAGACAGCTGTGAATCCAGCATATCAAAGTACAAAAAATTTTTACAGGAAGGTGGATCACTTGATTTGGACGTGACTTCTCCAAAACAACTCAACCGAAGACTCTTTTTGAAACAACTAGCTGTGGACTTGTGCACTAGTGAGCAAAGAATACTATTTCGCGCTCAATATATACTGCGGAGCAGACTGAGGAATATGAGGACTGGTGGATTAAGAGCCCTACAAATTTTCGATGGGTTTAGGAATCTTTTCCAATGA 1497 0.4302 MADASSTLYTTTLLPSFSPTKKTHAIQRHLTLPRKPQFHCSISASDATKTAVTETIPWGCDIDSLENASALQRWLSDSGLPPQKMAIERVNVGERGLVALKNIRKGEKLLFVPPSLFITADSEWSCPEAGEILKRNSVPDWPLLATHLISEASLMTSSRWSSYVSALPRQPYSLLYWSQAELDRYLEASQIRERAIERINNVIGTYNDLRLRIFSKHPSLFPEEVFNIDTFKWSFGILFSRLVRLPSMDDKFALVPWADMLNHSCDVETFLDYDKSSKGVVFTTDRPYQPGEQVFISYGKKSNGELLLSYGFVPKEGTNPSDSAELLLSLRKSDKCYDEKLQLLKKNGLSASQCFPVKVTGWPLELMAYAYLAVSPPSMRGKFEEMAAAASNKTTVKKDLKYPEIEEQALQFILDSCESSISKYKKFLQEGGSLDLDVTSPKQLNRRLFLKQLAVDLCTSEQRILFRAQYILRSRLRNMRTGGLRALQIFDGFRNLFQ 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1935 498 SMART set_7 83 305 IPR001214 GO:0005515
Lele25g1935 498 PIRSF RMT_SET 1 495 IPR011192 GO:0009507|GO:0030785
Lele25g1935 498 Gene3D - 318 481 IPR036464 -
Lele25g1935 498 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 329 482 IPR036464 -
Lele25g1935 498 ProSiteProfiles SET domain profile. 83 299 IPR001214 GO:0005515
Lele25g1935 498 CDD SET_RBCMT 82 313 IPR044431 GO:0016279|GO:0018022
Lele25g1935 498 FunFam Rubisco methyltransferase family protein 318 481 - -
Lele25g1935 498 SUPERFAMILY SET domain 67 316 IPR046341 -
Lele25g1935 498 Pfam Rubisco LSMT substrate-binding 332 465 IPR015353 -
Lele25g1935 498 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 66 434 - -
Lele25g1935 498 Gene3D set domain protein methyltransferase, domain 1 34 312 - -
Lele25g1935 498 Pfam SET domain 95 299 IPR001214 GO:0005515
Lele25g1935 498 FunFam Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic 51 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1935 Lele-ChrLele25 27013322 27018212 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Lele25g1935 SET 3.7e-17 No_clan