Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1930 ATGGGCCTCTCAAGTCTGCCAGCTCCATCTGAAGGAGTACTGTGTGTGCTTCTGGTTAACACTGCATTTTCCATATCCTTAGTTAAAGGCATTGTTAGAACAATCCTTCACATTGTTGGTATCAGCCTTTCATCATCACCTACCACCCCATCATCATCAACACCATCACCCTCATCATCAGAATCATCCCCATCTCCAGATATCTCTCAAGACCTGCCTGAGTCATTCCAATTCGGCCTCTGTTCGCCGGAGAATTACATTGAAGAGTTCAGAAGCCGGACACCGACAATCCGGTACGACAGTGTGTGTGGCTGCAAGCAACCTGAAGAACATGAATGCTCTGTATGTCTGAGTCAATTTGAGCCACAATCTGAGATAAACCGCTTGTCCTGTGGCCATCTATTCCACAAAGATTGCTTGGAGAATTGGCTGGCCTACTGGAACATTACATGCCCACTTTGCAGGACTCCATTGTTGCCTGAAGACGAGGTTTCTTCTTGCATTTGGTAA 510 0.4647 MGLSSLPAPSEGVLCVLLVNTAFSISLVKGIVRTILHIVGISLSSSPTTPSSSTPSPSSSESSPSPDISQDLPESFQFGLCSPENYIEEFRSRTPTIRYDSVCGCKQPEEHECSVCLSQFEPQSEINRLSCGHLFHKDCLENWLAYWNITCPLCRTPLLPEDEVSSCIW 169
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1930 169 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 82 160 IPR013083 -
Lele25g1930 169 PANTHER - 1 163 IPR044249 -
Lele25g1930 169 ProSiteProfiles Zinc finger RING-type profile. 113 155 IPR001841 -
Lele25g1930 169 Pfam Ring finger domain 112 155 IPR001841 -
Lele25g1930 169 MobiDBLite consensus disorder prediction 44 73 - -
Lele25g1930 169 SMART ring_2 113 154 IPR001841 -
Lele25g1930 169 SUPERFAMILY RING/U-box 102 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1930 Lele-ChrLele25 26965790 26966299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1930 1 169 C3H Transcription Factor Family AT2G04240 62.791 1.08e-62 189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1930 25 26965790 26966299 Lele27g0145 27 1144888 1145409 hybridization
Lele25g1930 25 26965790 26966299 Lele28g1976 28 22987195 22987710 hybridization