Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1929 ATGGGTTATATATGTGACTTTTGCGGAGATCAGAGGTCCATGGTATACTGCCGTTCTGATGCTGCATGTTTATGTTTGTCATGTGATCGAAATGTTCATTCTGCTAATGCTCTTTCTAAGCGTCACTCGAGAACCCTTATATGTGAGAGATGTAATTCACAACCTGCTCTTGCACGTTGTTCTGAAGAGAGGATTACACTATGTCAGAACTGTGATTGGTTAGGTCATGGACCAACTACATCTTATTCAACACATAAGAGGCAATCGGTCAATTGCTACTCTGGCTGTCCTTCAGCAGAAGAATTTTCTTCAATATGGCCATTTGTCTTGGATATCCCTTCCATGCGTGAAACAACCTGCGAGCAGAAACTAGGTTTGATGACCATTAATGAGAACAGCGACAAAAGTGCTTGTGTTCCTCCAGAAAGCCAGAATGCATCTGGTTCAGCTCAAGTAACTGATTTACACAGCTTCAATAAGTCTCGGGCCAGGGCCTGTGCAATACCTGAGTCAAGCTCAGAACCTCATATTCTGGACCAATCAACTGGACCTACCAATGCAAGTTTGCCCAAGTTATACTGTCCCAGTACAAAAGGTCCTGTGCCATATGAAGATGAAGATGATAGCCTGTATGGTGATTTTGACATGGATGAAGTGGATCTGAATCTTGAGAACTATGAGGAACTTTTTGGCATGACTCTTACTCATTCTGAAAAACTCTTTGAAAATGGTGGAATCGATAGCTTGTTTGGGATGAAGGATGTGTCTGCTGCTGATTCCAATTGTCAGGGATCTATTGCTGCTGAGGGCTCACCAGTCGGGCTGGTCGACACGGTGCAACCAGCGTACAGCAATGCAGCGTCTGCAGATTCTATTATGAGCACTAAAACTGAACCGATTCTTTGTTTTACGGGGAAGCAAGTGCAATCGAATCTTTCTTTTTCTGGGGTCACAGGAGATAGTAATGCTGGAGATTATCAAGACTGTGGTGCTTCTTCAATGCTTCTCATGGGAGAGCCTCCTTGGTGTCCTCCTTGTCCTGAAAATTCAATACAATCCGCCAACCGCAGCAACGCGGTCATGCGTTATAAGGAAAAGAAGAAGACCCGCCAGTTTGATAAAAAGGTGAGGTATGCCTCTCGCAAGGCAAGAGCCGATGTCCGAAAGCGCGTGAAGGGCCGGTTTGTCAAAGCTGGGGAAGCTTATGATTATGACCCTTTGAGCCCAACCAGAAGCTACTGA 1242 0.4493 MGYICDFCGDQRSMVYCRSDAACLCLSCDRNVHSANALSKRHSRTLICERCNSQPALARCSEERITLCQNCDWLGHGPTTSYSTHKRQSVNCYSGCPSAEEFSSIWPFVLDIPSMRETTCEQKLGLMTINENSDKSACVPPESQNASGSAQVTDLHSFNKSRARACAIPESSSEPHILDQSTGPTNASLPKLYCPSTKGPVPYEDEDDSLYGDFDMDEVDLNLENYEELFGMTLTHSEKLFENGGIDSLFGMKDVSAADSNCQGSIAAEGSPVGLVDTVQPAYSNAASADSIMSTKTEPILCFTGKQVQSNLSFSGVTGDSNAGDYQDCGASSMLLMGEPPWCPPCPENSIQSANRSNAVMRYKEKKKTRQFDKKVRYASRKARADVRKRVKGRFVKAGEAYDYDPLSPTRSY 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1929 413 MobiDBLite consensus disorder prediction 174 191 - -
Lele25g1929 413 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Lele25g1929 413 ProSiteProfiles CCT domain profile. 356 398 IPR010402 GO:0005515
Lele25g1929 413 Pfam CCT motif 356 398 IPR010402 GO:0005515
Lele25g1929 413 CDD Bbox1_BBX-like 47 90 - -
Lele25g1929 413 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lele25g1929 413 MobiDBLite consensus disorder prediction 170 191 - -
Lele25g1929 413 CDD Bbox1_BBX-like 4 47 - -
Lele25g1929 413 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 401 - -
Lele25g1929 413 SMART bboxneu5 4 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1929 Lele-ChrLele25 26956797 26960667 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1929 1 413 C2C2-CO-like Transcription Factor Family AT5G48250 56.161 7.81e-157 445
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Lele25g1929 CCT 4.4e-17 CL0281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1929 25 26956797 26960667 Lele27g0146 27 1154425 1158055 hybridization
Lele25g1929 25 26956797 26960667 Lele28g1975 28 22977565 22981411 hybridization