Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1915 ATGTTGCCTGGCCAAGAAACTTCAATCTCTCTCGTTAGCGTGATAGAAGATAACCTAACGCAGCTGAAGATGCTCGATGATGTTCTTTTCTCTCCTATTTGCAGTGAGAAATACTATGCCGATGTTCTTGCTTCTGGCGAACTAACAAAACTAGCTTATTACAGTGATGCTTGTGTTGGTACAATTGCATGCCGACGTGAGAAGACGAAAGATGGTGCAGTTAGGCTCTATATCATGACCATAGGTGTTTTAGCACCTTATCGCCGCATTGGTATTGGAACAAGGCTGATGAATCATGTTCTTGATTTGTGCTCCAAGGAGAACATGTGTGAGGTTTACTTGCATGTGCGCACTGACAATGAAGATGCCATAAACTTTTATAAGAAATTTGGGTTTGAAACGACGGAAAGGATCCCAAACTATCATAGGAACGCCATTATATATCATCACCTCAACTTCTTAACCCTTTACCGCATTCTAAAACTACACCACACAATCTCTTTCTCTCTTTCTCTGTCACTCATTCTGATAATGGCGACACAAGCTTTGGTATCTTCATCGTCTCTCACCTCGTCGGTGCAGGCTGCGAGGCAGATTCTGGGAGGGAGATCAACCCAGTATCCAACTGGGTCATCTAGAAAGACTTCTTTTGTAGTGAAGGCTTCTTCTACACCTCCTGTCAAGCAAGGAGCAGACAGACCCTTGTGGTTTGCATCCCAACAGAGTCTTTCCTACTTGGATGGCAGTCTTCCAGGTGACTATGGATTTGACCCACTAGGACTCTCAGACCCAGAGGGACCAGGAGGGTTCATTGAACCCAGATGGCTGGCATATGGTGAAATCATCAACGGACGTTATGCAATGTTGGGTGCAGTAGGAGCCATAGCACCTGAAATACTAGGCAAGGCTGGTCTAATCCCTGAGGAAACAGCACTCCCATGGTTCAAAACTGGAGTGATCCCACCAGCAGGAACCTACAACTACTGGGCTGACCCATACACCCTCTTTGTCTTTGAAATGGCTCTAATGGGCTTTGCAGAGCACAGGAGATTCCAAGATTGGGCCAAGCCTGGGTCCATGGGGAAGCAGTACTTCTTGGGCCTAGAGAAGGGCTTGGGAGGGTCCGGCGACCCGGCTTACCCTGGAGGCCCATTCTTTAACCCTCTTGGATTTGGGAAGGACGAGAAGTCAATGAAGGATTTGAAGCTGAAGGAAGTGAAGAATGGGAGGTTGGCTATGTTGGCTATCTTGGGATACTTTGTGCAAGGTCTTGTGACTGGTGTTGGTCCTTACCAGAACCTTCTGGATCATTTGGCTGATCCTGTGCACAACAATGTCTTGACCAGCCTCAAGTTCCATTAA 1362 0.4684 MLPGQETSISLVSVIEDNLTQLKMLDDVLFSPICSEKYYADVLASGELTKLAYYSDACVGTIACRREKTKDGAVRLYIMTIGVLAPYRRIGIGTRLMNHVLDLCSKENMCEVYLHVRTDNEDAINFYKKFGFETTERIPNYHRNAIIYHHLNFLTLYRILKLHHTISFSLSLSLILIMATQALVSSSSLTSSVQAARQILGGRSTQYPTGSSRKTSFVVKASSTPPVKQGADRPLWFASQQSLSYLDGSLPGDYGFDPLGLSDPEGPGGFIEPRWLAYGEIINGRYAMLGAVGAIAPEILGKAGLIPEETALPWFKTGVIPPAGTYNYWADPYTLFVFEMALMGFAEHRRFQDWAKPGSMGKQYFLGLEKGLGGSGDPAYPGGPFFNPLGFGKDEKSMKDLKLKEVKNGRLAMLAILGYFVQGLVTGVGPYQNLLDHLADPVHNNVLTSLKFH 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1915 453 Pfam Chlorophyll A-B binding protein 244 422 IPR022796 -
Lele25g1915 453 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 186 448 IPR001344 GO:0009765|GO:0016020
Lele25g1915 453 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 31 144 IPR016181 -
Lele25g1915 453 Pfam Acetyltransferase (GNAT) family 52 132 IPR000182 GO:0016747
Lele25g1915 453 SUPERFAMILY Chlorophyll a-b binding protein 232 449 - -
Lele25g1915 453 FunFam Chlorophyll a-b binding protein, chloroplastic 234 452 - -
Lele25g1915 453 Gene3D Chlorophyll a/b binding protein domain 235 452 - -
Lele25g1915 453 CDD NAT_SF 51 115 - -
Lele25g1915 453 FunFam Putative n-alpha-acetyltransferase 50 6 152 - -
Lele25g1915 453 Gene3D - 5 150 - -
Lele25g1915 453 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 9 163 IPR000182 GO:0016747
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1915 Lele-ChrLele25 26852490 26856784 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1915 196 453 Chloroplast and Mitochondria Gene Families AT1G61520 86.822 2.06e-166 467
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Lele25g1915 Chloroa_b-bind 8.4e-47 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1915 25 26852490 26856784 Lele27g0165 27 1254878 1256688 hybridization
Lele25g1915 25 26852490 26856784 Lele28g1961 28 22872941 22876341 hybridization