Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1914 ATGAACATACATCTAACTTTATTCATGGCCATGGATTTTGAAGTGTTTGTTGATCGTTGTTACGGTTCTGATATGATACAGATGAATATTGAGAATAATGCAGGAAAAAAGCTAATGAATCATGTTCTTGATTTGTGCTCCAAGGAAAACGTGTCTGAGGTTTACTGGCATGTGATTGCAGGCAATGGAGATGCCATAAACTTTTACAGGAAATTTGGGTTTGAAATGGCAAAATCAATCCAAAACTTTTACACATTTGAATCAGCTATAAAAGACTGCCATGTTTTCACCAAGCGTTTGGCTGTTGTTACTGAGCAGGAGGATGTAGCAGAAGAGAAGCTTTGCAGTGTAATGCAATGCAATGCAATGCAATATAATGAGATCTTGATTACAATGAATGTGTTTATCAATCCCCCTTCTTCTTCTCACACTCTGCAATCCAATCATTCCTTTGCAATCGCAATGCCTTCTACCTGCATTGTTCCTTCTGGTCACTCCGTCTTCTATCCTATATCCTTCACTACTTCCTCCGCATTGCCCTCTTCTCAGAGATTGAAACCTCGAATTCTAACGAAAACTGTGCCTTCTTCTCTGAGATCACCTAGTAGAGGAAGACTAGTTGTAAGAGCCGCTATTTCCATGGAGAAAGAGACGCCTGAATCTGAACGCCCACCAACTTTTCTCAGAGAATCTGATGGTCATGATCAAACCACTTCTTCCTCTTCTTCTGTCAGGGCTCGATTTGAGAAGATGATAAGGGAGGTTCAGGACAGCTTGTGCAGTGCACTTGAAGCTGCCGACGGGGGAGCCAAGTTTAAGGAGGATGTTTGGTCTAGGCCTGGTGGTGGCGGAGGAATCAGTAGGGTTCTTCAAGACGGAGCGGTTTTTGAGAAGGCAGGGGTTAATGTGTCTGTTGTTTATGGTGTGATGCCGCCTGAGGCTTATCGTGCTGCCAAAGCTGCTCCAGCTGATCAGAAACCCGGCCCGGTTCCTTTCTTTGCGGCTGGAATCAGCTCGGTTTTACACCCAAAGAACCCATTTGCCCCAACAGTGCATTTCAATTATCGGTATTTTGAAACTGATGCTCCCAAAGATGCTCCTGGAGCACCAAGACAATGGTGGTTTGGTGGTGGGACTGACTTGACCCCTTCTTACATTTTTGAGGAAGATGTCAAGCATTTCCATTCGATTCAAAAACGTGCTTGTGACAAGTTTGATCCTACATTCTATCCTCGATTCAAGAAATGGTGTGATGATTACTTCTATATCAAGCATCGGAATGAGAGGAGAGGGCTTGGAGGAATATTTTTCGATGATCTGAATGACTATGATCAGGAGATGCTACTCTCCTTTGCCACCGAATGTGCCAATTCTGTCATTCCTGCTTACATACCCATAGTAGAGAAAAGGAAGGACACGGCTTTTACAGATCAGCACAAAGCATGGCAACAATTGCGAAGGGGACGATATGTTGAATTCAATTTGGTTTATGATCGGGGCACAACATTTGGACTAAAAACAGGAGGGAGGATAGAGAGCATTCTTGTTTCTCTTCCACTAACTGCTCGGTGGGAATATGATCATAAACCTGAGGAAGGAAGTGAGGAATGGAAGCTTTTAGATGCTTGCATTAACCCAAAGGAATGGATCTAGGAACAAAAGGTAACACAGTATTCTCGCGCTAAACCAAGAACAATGGCTACTTCTTCTTCCTCTCATTCTTCAAAGAAATACGATGTCTTCATCAGCTTCAGAGGCGATACACGCGAAAGTTTCACCAGCCATCTTCACGCCGCTCTCTGTAGAAGCAAGATCGACACCTACGTCGATTACAGACTTGAGAAAGGAAGCGAGGTTTGGCCATCACTTGTCCAAGCCATTGACGATTCCATCCTATTTCTGGTCGTTTTTTCTGATAACTATGCTTCTTCCACTTGGTGCTTGAATGAGCTCACCAAAATTATGCTAAATTGCTCAAACAATCATGAGAACCGTGTTCTTCCAGTCTTCTACAGGGTGAACCCTTCACATGTACGGAAACAAACTCATAGTTACGGAGAAGCATTTATAAAACACGAGCAAGGAAATCACAATCAGCAAGTGCAAAAATGGAGGAATAGTCTCACTCAAGCTGCTAATTTATCTGGCTGGGATTCTAGTAAGTACAGGAATGAAGCTGAGCTGATTGAAGAAATTGTCAAATGCGTCTTAAAGAAGTTGGAGCTTATTCATCGAATTTATCCTTTTAATGGTCTTGTTGGAATTCATGAACGAATTGTACCTTTAGAATTATATTTGAGCAAGGAGTCAAAAGATGTTCGATTTATTGGAGTCTGGGGCATGGCTGGAATTGGCAAGACAACTATTGCAGCTGCAGTATTTAACAAACATTACCGTGATTATGAAGGGTTTTGCTTCCTGGCCAATGGAACTGTGTCCATTAAAGGCATAGCTTTGGATATGTCAAAGATTGAGAATCTGCCCTTGAGTTCTGAAGTCTTCACCAGAATGCGCAAGCTTAAATTTCTTATATTTTATAATTTTGGTTCAGAAGAGTTCAGATTGTATCTTCCTCAAGGCCTTAACTCTTTACCAAATGAACTCAGGCTTCTTCATTGGGATAACTTCCCTTTGAAGTCCTTACCATCGACATTCTCCGCGGAGAAACTCGTTTCGTTTGAAATGCGAAATAGCCAAGTCAGGATCCTTTGGCATGGAAAGCAAAATCTTGTGAACTTGAGGAAAATTGACCTCACTGATTCCTATAATCTAATTGAGCTCCCAGATTTTTCAAAGGCTTTAAATCTTCAAGAAGTAGATCTTCGAAACTGTACAAGCTTGCGTGACCTTCACCCATCTATTTTATCGCTGCATAAGCTTGAGATTCTACGATTGGATTGGTGCGAGTCCCTTACTAGCCTTAGATGTGACACCCCTCTAAGATCCCTTCGTGATCTTACCCTCTATGACTGCTCAAGATTGAAGGTATTTTCAATCACCTCAGAGAATATGAAGCATTTGAATCTAGCAGGAACTGCAGTGAATGAATTGCCATCATCTATTACAAGTCAAGGAAAACTTGAAACGTTCTCTCTTATTGATGGTAGAAGTCTTGATACTCCAAGCAACTCAGGTGATATGATATCTCTTGGCAAGTTACATACTGGAGATAATTACATGCACCTTGATGCTTCAAATCTGCGTTTTTTACACGATGGCTTAAGATCTTTGGAAGCCATGCCTCATGAGACTAGCATGTTTTCTTCATTAGAAATGCTATTAGTTGTTGGAACTGAACTTAGAAGCCTGCCTGCAAGCATCAAGCACCTTTCAAGGCTTCGATATCTTCGCTTTGATTCATGCAAAAGACTTCAGTCTCTGCCGGATCTTCCTTCATCATTAGAACAATTAATAGCCATTGACTGCCCATCACTTGAGACTCTTCACTTCTCTTCAGCAACTAGTCAACTAGTGAAGGCAAACAAGATAAGCTTTGACTTCCAAAACTGTGCCAAGTTGGATGAACATTCATTCAAACTAATTGGATCTAATGTTATGGCTGAGATAATCAAATCTGTTCCAGCCATAGAAAAATGCAGTTTCTCGAATGGTAAGGTTGAAGTTACATACCGCGGAAGCAGAGTTCCAGAGTGGTTCCTGCATAGGAAAACACAAGCTCCTCCCATCACTATTGATCTCTCTTCTGCTCTGCATTGTTCTGAGAATTGGGGTTTCATCTTTTGCGTCATTGTTCCTGAGTCCCCATCGATTGAATGGATTCGAGTTGAATGCGAAGCGTGCTTGGAAATTAGTTATGGTGAATGGGAAGCGACACACGAGTACTATTCACTCTCTGCTAAGCATATCAACTTCACTTCGGATCATGTTTTCCTTTGCTATGATGAAAGCTTTTGTTCTGAAATACATGAGACACTCAAAGAAAGTGTGGCAGATGATGCTGAGAGCAACGCTCGTAAACCGAAGGTCTCGTTTAATTTTTGGGTTCATTATGGTGGTGGGGGCTTTCATAAGAGGCAACAGGGATGCTTGGATATCAAAGAGTGTGGGGTGTGCCCAACATATACATCAGAATATCGCAGCTTCATTGAAAAATTGGACTTGCAATTGAAGTCAAAAACTGAGGCAATTGAAATGGGACATGGAAGCTCTTATCAGAACGAACAGAAACCTGAGGGATTTGTCTTTCCTTATGTTCCACGTCGAACCTGGAAGCATGAAAGAAAGGGGTTGGGAGACATCCTCTTCCTGTGA 4272 0.4192 MNIHLTLFMAMDFEVFVDRCYGSDMIQMNIENNAGKKLMNHVLDLCSKENVSEVYWHVIAGNGDAINFYRKFGFEMAKSIQNFYTFESAIKDCHVFTKRLAVVTEQEDVAEEKLCSVMQCNAMQYNEILITMNVFINPPSSSHTLQSNHSFAIAMPSTCIVPSGHSVFYPISFTTSSALPSSQRLKPRILTKTVPSSLRSPSRGRLVVRAAISMEKETPESERPPTFLRESDGHDQTTSSSSSVRARFEKMIREVQDSLCSALEAADGGAKFKEDVWSRPGGGGGISRVLQDGAVFEKAGVNVSVVYGVMPPEAYRAAKAAPADQKPGPVPFFAAGISSVLHPKNPFAPTVHFNYRYFETDAPKDAPGAPRQWWFGGGTDLTPSYIFEEDVKHFHSIQKRACDKFDPTFYPRFKKWCDDYFYIKHRNERRGLGGIFFDDLNDYDQEMLLSFATECANSVIPAYIPIVEKRKDTAFTDQHKAWQQLRRGRYVEFNLVYDRGTTFGLKTGGRIESILVSLPLTARWEYDHKPEEGSEEWKLLDACINPKEWIXEQKVTQYSRAKPRTMATSSSSHSSKKYDVFISFRGDTRESFTSHLHAALCRSKIDTYVDYRLEKGSEVWPSLVQAIDDSILFLVVFSDNYASSTWCLNELTKIMLNCSNNHENRVLPVFYRVNPSHVRKQTHSYGEAFIKHEQGNHNQQVQKWRNSLTQAANLSGWDSSKYRNEAELIEEIVKCVLKKLELIHRIYPFNGLVGIHERIVPLELYLSKESKDVRFIGVWGMAGIGKTTIAAAVFNKHYRDYEGFCFLANGTVSIKGIALDMSKIENLPLSSEVFTRMRKLKFLIFYNFGSEEFRLYLPQGLNSLPNELRLLHWDNFPLKSLPSTFSAEKLVSFEMRNSQVRILWHGKQNLVNLRKIDLTDSYNLIELPDFSKALNLQEVDLRNCTSLRDLHPSILSLHKLEILRLDWCESLTSLRCDTPLRSLRDLTLYDCSRLKVFSITSENMKHLNLAGTAVNELPSSITSQGKLETFSLIDGRSLDTPSNSGDMISLGKLHTGDNYMHLDASNLRFLHDGLRSLEAMPHETSMFSSLEMLLVVGTELRSLPASIKHLSRLRYLRFDSCKRLQSLPDLPSSLEQLIAIDCPSLETLHFSSATSQLVKANKISFDFQNCAKLDEHSFKLIGSNVMAEIIKSVPAIEKCSFSNGKVEVTYRGSRVPEWFLHRKTQAPPITIDLSSALHCSENWGFIFCVIVPESPSIEWIRVECEACLEISYGEWEATHEYYSLSAKHINFTSDHVFLCYDESFCSEIHETLKESVADDAESNARKPKVSFNFWVHYGGGGFHKRQQGCLDIKECGVCPTYTSEYRSFIEKLDLQLKSKTEAIEMGHGSSYQNEQKPEGFVFPYVPRRTWKHERKGLGDILFL 1423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1914 1423 MobiDBLite consensus disorder prediction 214 243 - -
Lele25g1914 1423 Gene3D - 755 840 IPR027417 -
Lele25g1914 1423 Pfam Coproporphyrinogen III oxidase 248 549 IPR001260 GO:0004109|GO:0006779
Lele25g1914 1423 FunFam Disease resistance protein RPS4 811 1002 - -
Lele25g1914 1423 Pfam NB-ARC domain 767 802 IPR002182 GO:0043531
Lele25g1914 1423 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 736 827 IPR027417 -
Lele25g1914 1423 Pfam C-JID domain 1211 1364 IPR045344 -
Lele25g1914 1423 ProSitePatterns Coproporphyrinogen III oxidase signature. 414 438 IPR018375 GO:0004109|GO:0006779
Lele25g1914 1423 Gene3D - 574 746 IPR035897 -
Lele25g1914 1423 FunFam Disease resistance protein (TIR-NBS-LRR class) 574 742 - -
Lele25g1914 1423 Gene3D Coproporphyrinogen III oxidase, aerobic 210 551 IPR036406 GO:0004109|GO:0006779
Lele25g1914 1423 Pfam Acetyltransferase (GNAT) family 33 74 IPR000182 GO:0016747
Lele25g1914 1423 Pfam TIR domain 577 745 IPR000157 GO:0007165
Lele25g1914 1423 ProSiteProfiles TIR domain profile. 576 740 IPR000157 GO:0007165
Lele25g1914 1423 SUPERFAMILY Coproporphyrinogen III oxidase 240 550 IPR036406 GO:0004109|GO:0006779
Lele25g1914 1423 MobiDBLite consensus disorder prediction 215 230 - -
Lele25g1914 1423 SUPERFAMILY Toll/Interleukin receptor TIR domain 568 717 IPR035897 -
Lele25g1914 1423 Gene3D Ribonuclease Inhibitor 878 1060 IPR032675 -
Lele25g1914 1423 Gene3D - 31 101 - -
Lele25g1914 1423 FunFam oxygen-dependent coproporphyrinogen-III oxidase, chloroplastic 209 550 - -
Lele25g1914 1423 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 35 93 IPR000182 GO:0016747
Lele25g1914 1423 PANTHER COPROPORPHYRINOGEN III OXIDASE, MITOCHONDRIAL 211 550 IPR001260 GO:0004109|GO:0006779
Lele25g1914 1423 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 34 100 IPR016181 -
Lele25g1914 1423 Gene3D Ribonuclease Inhibitor 1061 1222 IPR032675 -
Lele25g1914 1423 SUPERFAMILY L domain-like 818 1150 - -
Lele25g1914 1423 SMART till_3 577 714 IPR000157 GO:0007165
Lele25g1914 1423 PRINTS Coprogen oxidase signature 410 439 IPR001260 GO:0004109|GO:0006779
Lele25g1914 1423 PRINTS Coprogen oxidase signature 510 536 IPR001260 GO:0004109|GO:0006779
Lele25g1914 1423 PRINTS Coprogen oxidase signature 373 395 IPR001260 GO:0004109|GO:0006779
Lele25g1914 1423 PRINTS Coprogen oxidase signature 270 286 IPR001260 GO:0004109|GO:0006779
Lele25g1914 1423 PRINTS Coprogen oxidase signature 334 358 IPR001260 GO:0004109|GO:0006779
Lele25g1914 1423 PRINTS Coprogen oxidase signature 287 308 IPR001260 GO:0004109|GO:0006779
Lele25g1914 1423 PRINTS Coprogen oxidase signature 482 509 IPR001260 GO:0004109|GO:0006779
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1914 Lele-ChrLele25 26829989 26841237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1914 574 816 WRKY Transcription Factor Family AT4G12020 32.389 3.91e-22 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Lele25g1914 Coprogen_oxidas 7e-137 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1914 25 26829989 26841237 Lele27g0166 27 1260019 1265473 hybridization
Lele25g1914 25 26829989 26841237 Lele28g1959 28 22865364 22869092 hybridization