Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1882 ATGGACGAGGAACGCTTCCCTCACTCTCTTATACTCTCTTCTCCAGAAAGCCATTCAATGGAGTCAGAGGATAAGCATTCTTTGGATTCTAAGTCAGCCTGTGGATCGGCAGGTCCTTATGGGGTCTCTCCACGAAGTGTTGCTAAAAAAGTGGAAAGCAGTGCTTGGGGGATACCGCATGGGTCTGGGGCACATCATGCATCTAATGATGCTAGCTTGTTTTCAAGTTCTCTGCCTGTTCTTCCACATGAAAAGTTGAATTTCCCTGATTCAGTGCGTTATGGCCAACCTTTTGATGATAACATGCCAATGTTTAATAAAGACCACAAAGAAGTTGAGGGGTATGATCCACTTGAAGATGTTGAAACCAATGCTATTGGAAACATGCTTCCTGATGATGAAGAAGAGCTATTAGCTGGGATAACGGATGATTTTGACCTGAGTAGATTGCCCAGCCAACTGGAGGATTTGGATGATAATGATTTGTTTGGTAGTGGAGGAGGGCTAGAAATGGATTTTGAGCCCCAAGAGAGTCTTAAGATTGGCATGTCAAAGATGAGCATTACTGATGGAGTTGCTTCAAATGGTATGGGCCATTATGTACTTCCAAATGGCGTGGGACCTGTGGCTGGGGAGCATCCCTATGGAGAACATCCATCAAGAACATTATTTGTGAGAAACATTAATAGTAATGTTGAGGATTCTGAATTAAGATCACTATTTGAGCAATATGGGGATATTAGAACTTTGTACACTGCATGCAAGCATAGGGGTTTTGTGATGATATCTTACTATGATATTCGAGATGCTCGTACTGCAATGCGTGCTTTACAAAACAAGCCCTTGAGACGAAGAAAACTTGACATCCATTTTTCAATTCCTAAGGACAACCCCTCTGAAAAAGACGTCAACCAAGGAACTCTTGTAGTGTTCAATTTGGATCCGTCAGTATCAAATGATGATCTTCGTCTAATATTTGGGGCTTATGGGGAGGTCAAAGAGATAAGGGAAACACCACATAAGAGACACCATAAATTTATTGAATTTTACGATGTTAGAGCAGCTGAGGCAGCACTTAAGGCATTAAATCGATGTGATATTGCAGGGAAACGCATCAAACTTGAACCCAGCCGCCCTGGTGGGGCAAGAAGAAATTGGATGCAACAACTGAGTCAAGAGCTGGACCTAGATGAAGCCCGAACTTTTAGACATCAAGGAGGTTCACCATTAGCCAGTTCCCCTCCCGGTAACTGGGCACAATTTGACAGTCCAGTTGAACATAGTTATTTAAGTTCTTTTAGCAAGTCTCCAGTAAATAGCAACCATTCATCTGGGTTGGCCGCACTTCTCTCCCCTCATGCATCAAACTCTACAAAGATTGCTCCAATTGGCAAGGACTCAGGAAGAGTTAATAGTTCAAATCAGACATTTACAAATGCAGTATCAACACAAGGAGTAGCTTTTCAGAATTCACTGTCCTTTCCTGAGCTAAAAGCAAATGCAAGTTCTAGACCCGTTGCTGCTTTTGGTGAATCAAGCTCAACTTCATCAAGCATCGGAACCTTATCTGGTCCTCAATTTCTTTGGGGAAGTCCAACTACTTCTTACACACAACATTCAAACACTTCTGCTTGGTCTTCTTCTTCTTCTGGGCTCCCTTTAACATCTAGTGGTGAGAAGCAGGGTTATACTAATCGATACAGTTCCTTTCTTGGTTCCCGCTCCCATCATCATGTGGGATCTGCTCCTTCTGGCCTTCCTCTTGAAAGGCATTTTAACTATTTCCCAGAGTCTCCAGAAACTTCTTTCATGAGTCCAGTTTCATATGGGAGTATAAATCACAGTGATGGGAACTTCATGAACATGGGTGTTCGTGCAGCTACTGGGGTTATTGGCCTTTCAGGAAATACAACTGAAATTAATTCACCTAGTTTCAGGTTGATGTCACTGCCCAGGCATAGTTCTTTATTGCTTGGAAATGGTCCTTATTCTGGAGTGGTTGCAAATAATGAGGGGTTTACTGAACGTGTTCGGAGTCGGCGACCTGAAAATAGTGTGACACAAATTGATAGCAAGAAGCAGTATCAACTTGATCTAGACAAAATTATCAGTGGGGAAGATGCAAGGACTACTTTAATGATTAAAAACATTCCTAATAAGTACACTTCAAAGATGTTGCTATCTGCAATTGATGAGAACCACCGGGGCACTTATGACTTTCTCTACTTGCCCATTGACTTTAAGAACAAGTGTAATGTGGGTTACGCTTTCATCAATATGGTGTCTGCTTCTCATATTGTTCCTTTCTATAAGGAATTTAATGGGAAGAAATGGGAAAAATTTAATAGTGAAAAAGTTGCATCACTGGCTTATGCACGGATCCAGGGAAAGGCTGCACTTGTGACACACTTCCAAAATTCAAGCTTGATGAATGAGGATAAGCGATGCAGGCCAATTCTCTTCCATTCAGAGGGCCAAGAGATTGTTGACCAGGAACCTTTCATATCCAGCAATTTGAACATTTGCATCCGTCAACCAGATGGGTCATACTCAGGTGATTTGTTGGAAAGCCCGAAGGGCGATTTGGACGACAAGCTGTAG 2601 0.4225 MDEERFPHSLILSSPESHSMESEDKHSLDSKSACGSAGPYGVSPRSVAKKVESSAWGIPHGSGAHHASNDASLFSSSLPVLPHEKLNFPDSVRYGQPFDDNMPMFNKDHKEVEGYDPLEDVETNAIGNMLPDDEEELLAGITDDFDLSRLPSQLEDLDDNDLFGSGGGLEMDFEPQESLKIGMSKMSITDGVASNGMGHYVLPNGVGPVAGEHPYGEHPSRTLFVRNINSNVEDSELRSLFEQYGDIRTLYTACKHRGFVMISYYDIRDARTAMRALQNKPLRRRKLDIHFSIPKDNPSEKDVNQGTLVVFNLDPSVSNDDLRLIFGAYGEVKEIRETPHKRHHKFIEFYDVRAAEAALKALNRCDIAGKRIKLEPSRPGGARRNWMQQLSQELDLDEARTFRHQGGSPLASSPPGNWAQFDSPVEHSYLSSFSKSPVNSNHSSGLAALLSPHASNSTKIAPIGKDSGRVNSSNQTFTNAVSTQGVAFQNSLSFPELKANASSRPVAAFGESSSTSSSIGTLSGPQFLWGSPTTSYTQHSNTSAWSSSSSGLPLTSSGEKQGYTNRYSSFLGSRSHHHVGSAPSGLPLERHFNYFPESPETSFMSPVSYGSINHSDGNFMNMGVRAATGVIGLSGNTTEINSPSFRLMSLPRHSSLLLGNGPYSGVVANNEGFTERVRSRRPENSVTQIDSKKQYQLDLDKIISGEDARTTLMIKNIPNKYTSKMLLSAIDENHRGTYDFLYLPIDFKNKCNVGYAFINMVSASHIVPFYKEFNGKKWEKFNSEKVASLAYARIQGKAALVTHFQNSSLMNEDKRCRPILFHSEGQEIVDQEPFISSNLNICIRQPDGSYSGDLLESPKGDLDDKL 866
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1882 866 PANTHER RNA RECOGNITION MOTIF-CONTAINING 48 826 - -
Lele25g1882 866 MobiDBLite consensus disorder prediction 539 558 - -
Lele25g1882 866 CDD RRM2_MEI2_like 305 375 - -
Lele25g1882 866 SUPERFAMILY RNA-binding domain, RBD 711 796 IPR035979 GO:0003676
Lele25g1882 866 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 306 379 IPR000504 GO:0003723
Lele25g1882 866 CDD RRM3_MEI2_like 712 797 IPR034454 -
Lele25g1882 866 Gene3D - 305 400 IPR012677 -
Lele25g1882 866 SUPERFAMILY RNA-binding domain, RBD 218 382 IPR035979 GO:0003676
Lele25g1882 866 FunFam MEI2-like protein 5 isoform 2 210 304 - -
Lele25g1882 866 Pfam RNA recognition motif 2 709 805 IPR007201 -
Lele25g1882 866 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 221 294 IPR000504 GO:0003723
Lele25g1882 866 SMART rrm1_1 222 290 IPR000504 GO:0003723
Lele25g1882 866 SMART rrm1_1 711 787 IPR000504 GO:0003723
Lele25g1882 866 SMART rrm1_1 307 375 IPR000504 GO:0003723
Lele25g1882 866 MobiDBLite consensus disorder prediction 1 46 - -
Lele25g1882 866 CDD RRM1_MEI2_like 220 296 IPR034453 -
Lele25g1882 866 Gene3D - 211 304 IPR012677 -
Lele25g1882 866 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 223 287 IPR000504 GO:0003723
Lele25g1882 866 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 308 373 IPR000504 GO:0003723
Lele25g1882 866 FunFam Protein MEI2-like 1 305 400 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1882 Lele-ChrLele25 26579158 26586627 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1882 218 372 Eukaryotic Initiation Factors Gene Family AT1G71770 26.829 1.90e-11 65.9