Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1878 ATGCTCATTGAGTCTCTGTTTGTTCAAAAGGAATGCACTCTCTTGCTTCTTTGGGTGCTAAAGAATGCATTGTTTTTCTACTTTGGTCGGAATACCTTGATTCTCGTTGCAGTAGAACTTGGAGGACGAGTTGATCAACTTGTAGCATCCAATATGGCATCCAATGGCTCTTTAAAGGCTGAATTGTCGAAGAAGGTTTTGGGTGTGAAGTTATGGATTTTAATTGGGATTTGTGTAGGCGTGTTTATAGTACTGATTCTTTGTATATTATCTATATGGGTGATGTTTCGGAGAAAGTCTAGAAGATCTCTGGACAGGTATTCTTTATCCCAAATACCAAATATCTCGAAAGATATTAAGGTGGACAAAGTTGGGGTGCAGAGTTCTCATGATCACCCGGAAAGCGTATTTATTCCTGTTAATGACAAAGCAACTGATAAGAATTCAGATAAGATGCTCGTCCACTTAGGTGTGAGCAAATCCAGTGATCATGACAATATCAGTCAGTGCAGCTCAATTTATCATCATGAGAGAGGATTTAGTTCCCTGTCAGGAGAAGAAGGAAGCTCTGGGACTGTAAGGAAGCAATCTACATTGTCACATGCAGGGCTTGTGACTGCTTCTCCTTTAGTTGGCTTGCCAGAAATTTCTCATCTTGGATGGGGCCATTGGTTTACACTTAGGGATCTCGAACTAGCAACAAATCGTTTCTCAGCTGAAAATGTGCTAGGTGAGGGTGGATATGGTGTTGTTTACAAGGGCAGACTGATCAATGGAACTGAGGTGGCAGTGAAGAAAATTATTAATAACTTGGGACAGGCAGAGAAGGAATTCAGGGTAGAAGTGGAAGCTATAGGCCATGTACGTCACAAAAATCTTGTGCGCCTGCTTGGATACTGCATCGAAGGAGTTCACAGGCTTTTGGTGTACGAATATGTAAATAACGGCAACTTAGAACAATGGTTACATGGGGCTTTGCGCCAACATGGAATTCTTACCTGGGAGGCTCGCATGAAAGTTGTACTTGGCACTGCTAAAGCGCTTGCTTACTTACATGAAGCAATTGAACCGAAAGTTATTCACCGCGATATAAAGTCTAGTAACATATTAATTGATGATGAGTTTAATGCAAAGGTTTCTGACTTTGGATTGGCCAAACTTTTGGATTCAGGAGAAAGCCACATAACTACTAGAGTAATGGGAACATTTGGTTATGTGGCGCCGGAGTATGCTAATACTGGTTTATTAAATGAGAAGAGTGACATTTACAGCTTCGGTGTCCTCCTCTTGGAAGCAGTCACTGGAAGGGACCCTGTAGACTATGCGCGACCTGCTAATGAGGTTAATCTTGTTGAATGGCTCAAGATGATGGTGGGGACAAGAAGAGCTGATGAAGTTGCAGATCCAAGCCTTGAAGTTAAACCATCAACACGAGCTTTAAAGCGTGCCCTTTTGGTCGCACTTAGGTGTGTCGATCCTGATGCAGAGAAGAGACCCAAGATGAGTCAGGTTGTGAGGATGCTTGAAGCTGATGAATATCCCTTCCGAGAGGATCGAAGGAATCGAAAGAGCCGCACTACCAGCATGGAACTTGATTCCATGAAGGATATTTCTGGTTCATCTGAAGCAGAAAAGAAGGCTGGCGAGGCCGAAAACCAAGCCCCGGATACAACTGAGGGGTAG 1683 0.4308 MLIESLFVQKECTLLLLWVLKNALFFYFGRNTLILVAVELGGRVDQLVASNMASNGSLKAELSKKVLGVKLWILIGICVGVFIVLILCILSIWVMFRRKSRRSLDRYSLSQIPNISKDIKVDKVGVQSSHDHPESVFIPVNDKATDKNSDKMLVHLGVSKSSDHDNISQCSSIYHHERGFSSLSGEEGSSGTVRKQSTLSHAGLVTASPLVGLPEISHLGWGHWFTLRDLELATNRFSAENVLGEGGYGVVYKGRLINGTEVAVKKIINNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRLLVYEYVNNGNLEQWLHGALRQHGILTWEARMKVVLGTAKALAYLHEAIEPKVIHRDIKSSNILIDDEFNAKVSDFGLAKLLDSGESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAVTGRDPVDYARPANEVNLVEWLKMMVGTRRADEVADPSLEVKPSTRALKRALLVALRCVDPDAEKRPKMSQVVRMLEADEYPFREDRRNRKSRTTSMELDSMKDISGSSEAEKKAGEAENQAPDTTEG 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1878 560 SMART serkin_6 237 508 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele25g1878 560 Gene3D Phosphorylase Kinase; domain 1 218 312 - -
Lele25g1878 560 CDD STKc_IRAK 243 509 - -
Lele25g1878 560 Pfam Protein kinase domain 239 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele25g1878 560 MobiDBLite consensus disorder prediction 512 560 - -
Lele25g1878 560 FunFam Putative receptor-like serine/threonine-protein kinase 313 523 - -
Lele25g1878 560 MobiDBLite consensus disorder prediction 512 530 - -
Lele25g1878 560 PANTHER OS01G0323000 PROTEIN 52 532 - -
Lele25g1878 560 ProSitePatterns Serine/Threonine protein kinases active-site signature. 359 371 IPR008271 GO:0004672|GO:0006468
Lele25g1878 560 ProSiteProfiles Protein kinase domain profile. 237 516 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele25g1878 560 ProSitePatterns Protein kinases ATP-binding region signature. 243 266 IPR017441 GO:0005524
Lele25g1878 560 FunFam Putative receptor-like protein kinase 219 312 - -
Lele25g1878 560 SUPERFAMILY Protein kinase-like (PK-like) 221 511 IPR011009 -
Lele25g1878 560 MobiDBLite consensus disorder prediction 537 552 - -
Lele25g1878 560 Gene3D Transferase(Phosphotransferase) domain 1 313 526 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1878 Lele-ChrLele25 26544585 26548770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1878 68 511 Trihelix Transcription Factor Family AT1G70460 40.667 1.23e-96 307
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-V Lele25g1878 Pkinase 4.1e-49 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1878 25 26544585 26548770 Lele27g0201 27 1543824 1548017 hybridization
Lele25g1878 25 26544585 26548770 Lele28g1925 28 22549653 22553138 hybridization