Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1870 ATGGCCCGACCAAACAACTCACTAGGGTTTTATTGCCTTCCAGTGCAACGAGGCGTGATTGTGCAGTCGTGCTTCTTCCTCTTGCGTTCATCGTCCCAAATGGTTTCCTTCAGGTTTCACCAGTACCAGGTGGTGGGAAGGGCCCTTCCCACAGAGGCTGATGAGCACCCGAAGATCTACCGTATGAAGCTTTGGGCCACCAATGAAGTCCGTGCCAAATCCAAGTTCTGGTATTTCCTGAGAAAGCTGAAGAAAGTGAAGAAAAGTAACGGGCAAGTGCTAGCCATTAACGAGATTTATGAGAAAAACCCTACCAAGATTGATAACTATGGAATTTGGCTTCGATATCAAAGTCGAACTGGTTATCATAACATGTACAAGGAATACCGGGATACCACCCTCAATGGCGCCGTTGAACAAATGTACACTGAAATGGCATCACGTCACCGGGTGAGGTTTCCATGCATCCAGATCATCAAGACAGCCACCATCCCTGCAAAGCTGTGCAAAAGAGAGAGCTCCAAGCAGTTCCACAATTCTAAAATCAAGTTCCCATTGGTGTACAAGAAGGTTAGGCCGCCAAGTAGGAAGCTGAAGACAACATACAAGGCATCAAGGCCCAACTTTTATGCAAAACAGAACTCACAGTTGGGGGATGAACAAGTTGTTCTTGGAGAAGAGATTGATCATGTGAGGTTGATCACCTTAAACCGGCCTCGTCAATTAAATGCTATTTCACCTGAACTTGTTTTCTTGGTGGCGGCATATCTAGAAAAGTGGGAGAAAGATGATAAAGCAAAGCTTATTATCTTTAAGGGAGCTGGTCGAGCTTTTTCTGCCGGAGGAGATTTGAAAGTGTTTTATGATGGCAAAAAGTCAAAGGATTCCTGCCTTGAGGTGGTCTACAGAATGTATTGGCTTTGCTATCACATTCATACCTATAAGAAAACCCAGGTTGCCCTCGTTCATGGAATTTCAATGGGTGGAGGCGCAGCGTTCATGGCGCCGATGAAATTTTCAGTTGTTACAGAGAAAACGTTTACGACGACAATATTCTCTTCATGTCAGAAACTTGCTGAGTTAGAGAAGCGCTTGATTAGCTTAAATTCTGGTGATGAGAAGGCTGTAAGATCAGTAATTGAAGATTTTTCTTCAGAAGTTAAGCTTGACGAAGACAGCATCTTAAACAACACATTGCATTATGATTTGTGCTTTCGGAAGGAAGCTGAAGCAAGCAAAGAAGAAAATGGATGGATTGGCGCAATACTTAAAGGAATGAAAAGGTCTTCACCTGCTGCATTGAAAATAACCTTAAGATCGATTCGTGAAGGAAGGAATCAGACACTATCAGAATGTTTGAAAAAGGAATTTAGGTTAACGATGAATATACTACGAACCACAATATCTGAGGATATGTATGAGGGTATTAGAGCTCTCACAATTGACAAGGATAATGCTCCAAAGTGGCAACCTCCAGCACTTGACAAAGTAGAAGATGGGAAGGTGGATTTGGTCTTTCAGCCATTTGAAAAGGATTTTGAGCTGCAGATTTCAGAAAAGGAGGAATGCAGGTTGGATATATATGTTTTGAAAGATGATTAA 1602 0.4257 MARPNNSLGFYCLPVQRGVIVQSCFFLLRSSSQMVSFRFHQYQVVGRALPTEADEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQVLAINEIYEKNPTKIDNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATIPAKLCKRESSKQFHNSKIKFPLVYKKVRPPSRKLKTTYKASRPNFYAKQNSQLGDEQVVLGEEIDHVRLITLNRPRQLNAISPELVFLVAAYLEKWEKDDKAKLIIFKGAGRAFSAGGDLKVFYDGKKSKDSCLEVVYRMYWLCYHIHTYKKTQVALVHGISMGGGAAFMAPMKFSVVTEKTFTTTIFSSCQKLAELEKRLISLNSGDEKAVRSVIEDFSSEVKLDEDSILNNTLHYDLCFRKEAEASKEENGWIGAILKGMKRSSPAALKITLRSIREGRNQTLSECLKKEFRLTMNILRTTISEDMYEGIRALTIDKDNAPKWQPPALDKVEDGKVDLVFQPFEKDFELQISEKEECRLDIYVLKDD 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1870 533 FunFam 60S ribosomal protein L18a 34 104 - -
Lele25g1870 533 FunFam 60S ribosomal protein L18a 105 180 - -
Lele25g1870 533 SUPERFAMILY ClpP/crotonase 221 490 IPR029045 -
Lele25g1870 533 Pfam Enoyl-CoA hydratase/isomerase 231 347 IPR045004 -
Lele25g1870 533 Pfam Enoyl-CoA hydratase/isomerase 350 506 IPR045004 -
Lele25g1870 533 Gene3D - 28 103 - -
Lele25g1870 533 PANTHER 60S RIBOSOMAL PROTEIN L18A 36 210 IPR028877 -
Lele25g1870 533 Pfam Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A 40 161 IPR023573 GO:0003735|GO:0005840|GO:0006412
Lele25g1870 533 CDD crotonase-like 223 347 - -
Lele25g1870 533 Hamap 50S ribosomal protein L18Ae [rpl18a]. 39 102 IPR028877 -
Lele25g1870 533 Gene3D - 218 351 - -
Lele25g1870 533 Gene3D - 352 523 - -
Lele25g1870 533 Gene3D - 104 176 - -
Lele25g1870 533 SUPERFAMILY RplX-like 104 179 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1870 Lele-ChrLele25 26433309 26442204 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1870 17 210 Cytoplasmic Ribosomal Protein Gene Family AT2G34480 84.536 3.57e-119 348