Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1853 ATGGCGAGACGACCAAGACAGAAGAACCATTCGACACTGATCACAGACAACAAAACCAAGCATGTCACCTTCTCCAAGCGTCGTTTTTCCGTCTTCAAGAAAGCCAGTGAGCTCTGTACCTTGTGCGCCGTCGAGATGGCGCTCATCATCTTCTCTCCCGGCGGAAAACCCTACTCGTTCGGCAATCCTTCAACTGAAGCAGTTCTCAACAGACTGCTCCACCCTGGTTCTGCAACACTGGCGCCGATCGGTCGTAACTCTTCTTATTCTGCAGAAGAAAAGGCACGACGGGAAGCAACGATGGACGAACTGAACAAGCAATACAACGATCTGAATGAACAGTTGCAGGAAGAGAAGAAACGAGCGAAGGAACTGAAGAAAAAGATGAAGGATCTTCCAGATATCGAGAAGATGAGTAACAGAGATGAGCTGATGAAGTGGAACGAATCGTTTGAAGCTCTGAGAGTGAAATTACGCGATCGTAAAGAGGACCTTTTAGCTGCGAATTTAACGTTGGGTGGTGTGTATTCTGCAGGAGAAGCTTCTTCTTCTTCAAGCTCTGCGCCGAAAACTCATCATCGTCAAGCCGAAGGAGCAGATAATTCTTCTGCAAATGCCAACATGAGGTCATCTTAG 636 0.4748 MARRPRQKNHSTLITDNKTKHVTFSKRRFSVFKKASELCTLCAVEMALIIFSPGGKPYSFGNPSTEAVLNRLLHPGSATLAPIGRNSSYSAEEKARREATMDELNKQYNDLNEQLQEEKKRAKELKKKMKDLPDIEKMSNRDELMKWNESFEALRVKLRDRKEDLLAANLTLGGVYSAGEASSSSSSAPKTHHRQAEGADNSSANANMRSS 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1853 211 SMART madsneu2 2 63 IPR002100 GO:0003677|GO:0046983
Lele25g1853 211 PRINTS MADS domain signature 6 26 IPR002100 GO:0003677|GO:0046983
Lele25g1853 211 PRINTS MADS domain signature 26 41 IPR002100 GO:0003677|GO:0046983
Lele25g1853 211 PRINTS MADS domain signature 41 62 IPR002100 GO:0003677|GO:0046983
Lele25g1853 211 Coils Coil 94 135 - -
Lele25g1853 211 ProSiteProfiles MADS-box domain profile. 4 64 IPR002100 GO:0003677|GO:0046983
Lele25g1853 211 FunFam Agamous-like MADS-box protein AGL62 16 81 - -
Lele25g1853 211 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 14 60 IPR002100 GO:0003677|GO:0046983
Lele25g1853 211 MobiDBLite consensus disorder prediction 177 211 - -
Lele25g1853 211 PANTHER MADS BOX PROTEIN 6 153 - -
Lele25g1853 211 SUPERFAMILY SRF-like 6 74 IPR036879 GO:0003677|GO:0046983
Lele25g1853 211 Gene3D - 17 79 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1853 Lele-ChrLele25 26299557 26300192 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1853 6 149 Type I MADS-box Gene Family AT2G24840 37.500 4.47e-24 94.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Lele25g1853 SRF-TF 1e-20 No_clan