Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1844 ATGCTATTGTTTTTGAATTATGCTGTTATAGCAGCTGCTGATGTCTTGTTATGGAGGGACAAGAAGATTTCGGCTGGTGTTTTAACTAGTGCAACATCTGTATGGGTGCTTTTTGAATGGCTTAATTATCATCTCCTGAAGCTTTTATGCTTTGCTCTGGTTCTTGTTATGGTTATGCAGTTTATTTGGTCAAATGCTTCTGGCTATTCTAACAGTCTTCCATCTGAAGTTCCCCGCCTTGTCCTCCCAGAAGATTTCTTTGTCAACATTGCAACAACAGCGGGCGCTGAGGTTAACCGAGGTTGTTGGAAGCTTGATGGCTGCAGCTGTGATTGGAGGCTGGTTCAATTTTCTCACTGTCATTTATATTGGTTTATATCAAATAAGTGCTTAGTAACATTTCATGTGGCATGGCCTGTTCACAGGGTAAAAGCAGTTACTTCTGAGGGTTCTGCTACGCTGAAAACAGAGGAAGAGAAGAAGGTGAAGTTGGGTGGTTCTGAGTTGAAGGTGACAAAGCTGGGAATTGGTTCTTGGTCTTGGGGTGACACTATTTTCTGGAACAATTTCCAATGGACTGATAGGGATGAGAAAGCTGCCAGAGATGCTTTCAATGCTAGTGTTGATGGAGGTCTAACCTTCTTTGATACTGCTGAAATTTATGGTTCTAATCTCATGCTAGGAGCAGTAAATTCAGATATTCTTCTTGGAAGGTTTATAAAGGAAAGAAAACGGAGGGATCCAAAAGCAGAGATTGTTGTTGCTACCAAGTTTGCTGCATTGCCCTGGCGGCTTGGCCGTCAAAGTGTTCTCGCTGAACTTAAAGATGCCCTTTGCAGACTCGGACTCTCTTCAGTGGAGCTTTATCAGCTGCACTGGCCTGGAGTATGGGGAAATGAAGAAAAGCGGCTCCACGAGGTTTATGCGAAGCTTAAGAAGAGGTGCATTCCATTGGCTTCAAACCAAGTAAACTATAGCCTCATCTACAGGGCCCCTGAAGAGAATGGTGTGAAAGCTGCATGCGATGAACTTGGAGTCACAGTTATAGCATATTGCCCACTTGCTCAAGGAGTTTTGACTGGAAGTTATGGTCCTGAGAATCCACCAACTGGCCCTAGGCGCATAGTTTATACTCCAGCATACCTAAGAAAGGCAAGTGATTTTGCAGATCTAATACTTGTAGCCACGGCGATCCCGCTAGCCGGATCTAAAACTGCAGGACAAGCTGAGGAATTCGTTGGTGCATTGGGTTGGAGGCTAAATGATGATGAGATAGCTGAGCTGAGAAAGCAATGGCAAGAATCCCATGGGGTAGTTTTGAACAGCCAAACAACAACACATAGGAAACCAGTTTTGAATAATTCAGTAAACTCAAGACAAGTTCAGAATAATGATCACCCAACATTGAGGAATAGTGGATCATATGGGAATTCGAGTAATTTGTTTCAAGAAGATGAGACAGTTTCATGGATTCATTACCCACTGGAAGATCCATTGGAACAAGAACTATGTTCATACTTTTTACCTGAACTTCCATCTTGTGAGATTGAGACAGATAAACCAAATAAGCAGTTGGAAGAAGACAAGTTCGCCAAATTCGCTACCGATAGTGCCTCTTCTCATCTGACAGCAACTTCACCACCGCCTAATATGAAACTGTCCTCTGTTCAGAAATTCTCAGGAAATCCTGTTCTTTCACCTAGATTTTTTCCTGATTCATCTCAGAAAAACGTTGACTTCAATGGGTCGCGAAAATTCCTCAATTTCTCTAAGTTTTCAGCAGTTCCTAAGACTTCTAATGCACAACATGGAGAAAAAGGTAATGGGAATATGTTGCTGAATGAGGCTGGAGAGGGCTCAGTGATGACAGTTGGTTCAAGTCATTGTGGAAGCAATCAAATTCCTCGAGACCAAGATGTGAGCAGGATTTCGAGCAATGGTGTTTGGAATACTAGTTTGTCAGCAGAGCCTTCTTCATTTAGGGATAATGTTCAGAGAACTTTTCCAACGGGCGGCGGAAAAGGTAAATCAGAAACACATGAACCAACTTTGACTTCATCTTCCGGTGGCTCAGACAGTAGTAGTCTTGAAAAAACTTGTTCCCGCTCTACTAGTATCTGTAGCCAGAAAAGAAAAGGGATAGATTCAGAAGAGTTAGAGAAACAAAGTGAGACCACAGAACTCAAATCAGTAGCTAGAAACAATGCAGCTCAGCGGACTGGGTCTTCCCGAAGGAACCGTGCTGCTGAAGTGCATAATCTCTCAGAAAGGAGACGAAGAGACCGGATCAATGAGAAGATGAGGGCGTTGCAACAGCTCATACCTCACAGTAACAAGACAGACAAAGCATCCATGCTAGATGAGGCGATAGAATATTTGAAATCACTTCAGTTTCAGCTTCAGATGATGTTGATGGGAGCTGGCATGACACCGGTGATGATTCCAGGAATTCAGCACTACATGTCTCAAATGGGCATGGGATTGGCGACGCCTTCTTTGTCTAATCATATGAATATACCAAGATTACCACTTGATCAATCGATATCTATGTTTCAAGAACCAAATCAGACTGTGACATTCCAAGCTCCTGTTCTGGGTCCCTTTAATTACCAAAATCATATGCAAAATCCACCTCTTTCCGAGCAATATGCGCGCTGCATGGGCTATCATCATCTTATGCAAAGTGCCTCTCAGCCTATGACTGCAATCAGTTACGGTTCCCAGGCAGTACAACATAGTCAAACAATGATTCCATCCAGCAGTATCAATGGACCCCTGAGTGGGGCAGTTAATACCAATGATGCTGTCGGTGGCAGGACGGGTAAGCCGCATTAA 2835 0.4328 MLLFLNYAVIAAADVLLWRDKKISAGVLTSATSVWVLFEWLNYHLLKLLCFALVLVMVMQFIWSNASGYSNSLPSEVPRLVLPEDFFVNIATTAGAEVNRGCWKLDGCSCDWRLVQFSHCHLYWFISNKCLVTFHVAWPVHRVKAVTSEGSATLKTEEEKKVKLGGSELKVTKLGIGSWSWGDTIFWNNFQWTDRDEKAARDAFNASVDGGLTFFDTAEIYGSNLMLGAVNSDILLGRFIKERKRRDPKAEIVVATKFAALPWRLGRQSVLAELKDALCRLGLSSVELYQLHWPGVWGNEEKRLHEVYAKLKKRCIPLASNQVNYSLIYRAPEENGVKAACDELGVTVIAYCPLAQGVLTGSYGPENPPTGPRRIVYTPAYLRKASDFADLILVATAIPLAGSKTAGQAEEFVGALGWRLNDDEIAELRKQWQESHGVVLNSQTTTHRKPVLNNSVNSRQVQNNDHPTLRNSGSYGNSSNLFQEDETVSWIHYPLEDPLEQELCSYFLPELPSCEIETDKPNKQLEEDKFAKFATDSASSHLTATSPPPNMKLSSVQKFSGNPVLSPRFFPDSSQKNVDFNGSRKFLNFSKFSAVPKTSNAQHGEKGNGNMLLNEAGEGSVMTVGSSHCGSNQIPRDQDVSRISSNGVWNTSLSAEPSSFRDNVQRTFPTGGGKGKSETHEPTLTSSSGGSDSSSLEKTCSRSTSICSQKRKGIDSEELEKQSETTELKSVARNNAAQRTGSSRRNRAAEVHNLSERRRRDRINEKMRALQQLIPHSNKTDKASMLDEAIEYLKSLQFQLQMMLMGAGMTPVMIPGIQHYMSQMGMGLATPSLSNHMNIPRLPLDQSISMFQEPNQTVTFQAPVLGPFNYQNHMQNPPLSEQYARCMGYHHLMQSASQPMTAISYGSQAVQHSQTMIPSSSINGPLSGAVNTNDAVGGRTGKPH 944
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1844 944 MobiDBLite consensus disorder prediction 711 727 - -
Lele25g1844 944 PANTHER TRANSCRIPTION FACTOR PIF3 421 919 IPR044273 GO:0003700|GO:0006355
Lele25g1844 944 MobiDBLite consensus disorder prediction 914 944 - -
Lele25g1844 944 ProSiteProfiles Reticulon domain profile. 12 100 IPR003388 -
Lele25g1844 944 MobiDBLite consensus disorder prediction 622 641 - -
Lele25g1844 944 MobiDBLite consensus disorder prediction 914 934 - -
Lele25g1844 944 MobiDBLite consensus disorder prediction 652 672 - -
Lele25g1844 944 CDD bHLH_AtPIF_like 747 810 - -
Lele25g1844 944 CDD AKR_AtPLR-like 170 429 - -
Lele25g1844 944 FunFam Basic helix-loop-helix transcription factor 742 805 - -
Lele25g1844 944 SUPERFAMILY NAD(P)-linked oxidoreductase 161 433 IPR036812 -
Lele25g1844 944 Pfam Reticulon 13 107 IPR003388 -
Lele25g1844 944 Pfam Helix-loop-helix DNA-binding domain 751 797 IPR011598 GO:0046983
Lele25g1844 944 Gene3D - 160 299 IPR036812 -
Lele25g1844 944 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 744 811 IPR036638 GO:0046983
Lele25g1844 944 MobiDBLite consensus disorder prediction 652 754 - -
Lele25g1844 944 Gene3D - 300 444 IPR036812 -
Lele25g1844 944 MobiDBLite consensus disorder prediction 728 744 - -
Lele25g1844 944 Pfam Aldo/keto reductase family 306 429 IPR023210 -
Lele25g1844 944 Pfam Aldo/keto reductase family 173 297 IPR023210 -
Lele25g1844 944 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 747 796 IPR011598 GO:0046983
Lele25g1844 944 SMART finulus 753 802 IPR011598 GO:0046983
Lele25g1844 944 MobiDBLite consensus disorder prediction 679 710 - -
Lele25g1844 944 MobiDBLite consensus disorder prediction 458 478 - -
Lele25g1844 944 Gene3D - 742 804 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1844 Lele-ChrLele25 26214619 26229567 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1844 423 924 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G43010 32.752 1.04e-37 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lele25g1844 Aldo_ket_red 2.5e-11 No_clan