Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1838 ATGAGTCTTTCTTCTTCAGGAGTTGGTCAACCGGCTCAAGAAGGGGAGACAAAATGTTTAAATTCTGAACTATGGCATGCGTGTTCTGGTCCTCTGGTGTCTCTACCACCTGTTGGAAGTCGTGTGGTCTACTTTCCCCAAGGTCACAGTGAGCAGGTTGCTGCTTCAACAAACAAGGAAGTAGATGCACATATTCCCAGTTACCCTAACTTGCCACCACAGCTTATCTGTCAGCTTCACAATGTGACAATGCATGCAGATGTGGAAACAGATGAAGTATATGCTCAAATGACTCTGCAACCTTTAAGTCCGCAAGAGCAAAAGGATACATATCTACTGCCTGCAGAATTTGGTACTGCCAGCAAACAACCAACCAACTACTTCTGCAAAACATTAACAGCAAGTGATACCAGCACTCATGGAGGATTTTCTGTTCCTCGAAGAGCTGCTGAAAAAGTCTTCCCTCCTCTTGATTACTCGCAGCAGCCTCCTGCACAGGAACTAATTGCAAGGGATCTTCATGATAATGAATGGAAATTCAAACACATTTTTCGAGGTCAGCCGAAGAGGCATCTTCTGACTACAGGGTGGAGTGTTTTTGTTAGTGCTAAGAGGCTCATTGCTGGTGATTCAGTCCTTTTTATCTGGAATGACAAAAATCAACTCCTCTTGGGAATCCGGCGAGCAAATCGTCCACAGACTGTCATGCCATCTTCAGTCCTGTCAAGTGACAGCATGCATATAGGTCTTTTTGCTGCTGCAGCTCATGCAGCTGCTACAAATAGCCGCTTTACTATATTCTATAACCCAAGGGCAAGCCCATCAGAATTTGTCATTCCCTTAGCAAAGTATGTCAAAACTGTATATCATACCCGAGTTTCTGTTGGCATGCGATTTAGGATGTTATTCGAGACAGAAGAATCAAGTGTCCGTAGGTACATGGGTACTATAACAGGGATTAGTGATTTAGATCCTGTTCGCTGGCCAAATTCTCACTGGCGTTCTGTGAAGGTTGGCTGGGATGAGTCCACTGCAGGGGACAGGCAGCCTAGAGTTTCCTTGTGGGAGATTGAACCGTTGACAATATTCCCTATGTATCCATCCCCATTCCCTTTGAGGCTGAAACGCCCATGGCCATCAGGACTACCTTCTTTTGGTCTAAATGATGGTGACATTAGCATTGGTTCTCCATTCACTTGGCTCCATGGTGGGCTTGGGGATCAAGGTATGCAATCTCTGAACTTCCAGGCACTGGGGGTTGCACCATGGATGCAGCCAAGACTTGAGGCTTCTATGTCAGGACTTCAGCCAGAAATATACCAAGCAATGGCTGCTGCTGCACTTCAGGAAATGAGGGCAACGGGTCCGTCTAAGCCACGTTCTGAATCTCTGCTGCAGTTTCAGCAGTCTTCAAATGTTCCTGGTGCTCCTTCTGATATCCAGAGGCAAGTGTTACAGCAGTCTCAGTCCCAAAATGTCCTACACAACTTGCAAGAAAACCAGATTCCTTCTCAGTCTTCGCTTCTACAACGACAGTTGCAACGTTACCATCCTTATAATGATCAGAGGCAGCAGCAGCAACAGCAACAGCAACAACCTAACAGTGTACCTGTTCAGCAGCAGATCTCAAAAGTTGTCTCTCCTTTGTCTAATTTTGCATCACATACCCAGTTTCTCTGCCCAACCGTGCCAGCTATTTCTTCAAATTGCCAGCAGCAGAGTTTTCCCGAACCTGCCAGGAACCAAATTCCCAGCTCTGATGTTTCTGCTATCCACAGTCTACTAGGATCGTTTCCCCAGGATGGAGTATCCCAGTTACTTAACATGAATGGATCCAACTCTCTGATTTCTCCTGCTTCCTTACTACCCAAGCAAATAACTGGTGAACCTCAGCTTCAAACTGCTGCTGCTCAGTGTGTATTACCCCAGGTGGAAAACTTGGGAACATCACACTCTAATGTATCTGAACTTCCTATTTTGCCTCCATTTCCTGGAAGAGAATATTCTGCATACCAAGCTTCGAACTTCAATGATGCTACAGGGATTGGTTATCCTTCAAGTTCAGACATGACATCAAATTGTGTAGATGAATCTGGTTTTCTGCAGTCTTCTGAAAATGTGGAGCAAGCAAATACATCAACTGGAACCTTCGTCAAGGTTCACAAGTCGGGGTGCTTTGGGAGGTCACTGGACATCTCTAAGTTTAGCAGCTACGATGAACTACGTGGTGAGCTTGCCCGCATGTTTGGGCTTGAAGGGCAACTAGAGAACCCTCAGAGATCAGGCTGGCAGCTTGTATTCGTTGACCGGGAGCATGATGTTCTTCTCCTTGGTGATGACCCTTGGCAGGAGTTTGTGAACAATGTGTGGTACATCAAGATTCTGTCTCCACTTGAAGTACAACAAATGGGCAGAGAAAGTCTTGGTCCCACAGCTTCTACATTGAGCCACAAGCTTTCTACCACTAGCAATGCTTGCGACAACAACCACGCCAGTCGACAAGAGTTGAGAAATCCTAGCAATGGCATTGCGTCGATGGGATCTCTAGACTACTAG 2556 0.4601 MSLSSSGVGQPAQEGETKCLNSELWHACSGPLVSLPPVGSRVVYFPQGHSEQVAASTNKEVDAHIPSYPNLPPQLICQLHNVTMHADVETDEVYAQMTLQPLSPQEQKDTYLLPAEFGTASKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQQPPAQELIARDLHDNEWKFKHIFRGQPKRHLLTTGWSVFVSAKRLIAGDSVLFIWNDKNQLLLGIRRANRPQTVMPSSVLSSDSMHIGLFAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKTVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGDRQPRVSLWEIEPLTIFPMYPSPFPLRLKRPWPSGLPSFGLNDGDISIGSPFTWLHGGLGDQGMQSLNFQALGVAPWMQPRLEASMSGLQPEIYQAMAAAALQEMRATGPSKPRSESLLQFQQSSNVPGAPSDIQRQVLQQSQSQNVLHNLQENQIPSQSSLLQRQLQRYHPYNDQRQQQQQQQQQPNSVPVQQQISKVVSPLSNFASHTQFLCPTVPAISSNCQQQSFPEPARNQIPSSDVSAIHSLLGSFPQDGVSQLLNMNGSNSLISPASLLPKQITGEPQLQTAAAQCVLPQVENLGTSHSNVSELPILPPFPGREYSAYQASNFNDATGIGYPSSSDMTSNCVDESGFLQSSENVEQANTSTGTFVKVHKSGCFGRSLDISKFSSYDELRGELARMFGLEGQLENPQRSGWQLVFVDREHDVLLLGDDPWQEFVNNVWYIKILSPLEVQQMGRESLGPTASTLSHKLSTTSNACDNNHASRQELRNPSNGIASMGSLDY 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1838 851 Gene3D - 292 363 - -
Lele25g1838 851 Gene3D - 126 229 IPR015300 -
Lele25g1838 851 MobiDBLite consensus disorder prediction 519 540 - -
Lele25g1838 851 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 804 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lele25g1838 851 SUPERFAMILY DNA-binding pseudobarrel domain 114 257 IPR015300 -
Lele25g1838 851 SMART B3_2 128 230 IPR003340 GO:0003677
Lele25g1838 851 MobiDBLite consensus disorder prediction 459 481 - -
Lele25g1838 851 FunFam Auxin response factor 292 364 - -
Lele25g1838 851 SUPERFAMILY CAD & PB1 domains 706 789 - -
Lele25g1838 851 ProSiteProfiles PB1 domain profile. 715 799 IPR000270 GO:0005515
Lele25g1838 851 Pfam AUX/IAA family 673 797 IPR033389 -
Lele25g1838 851 FunFam Auxin response factor 710 804 - -
Lele25g1838 851 FunFam Auxin response factor 126 230 - -
Lele25g1838 851 Pfam Auxin response factor 254 337 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lele25g1838 851 ProSiteProfiles B3 DNA-binding domain profile. 128 230 IPR003340 GO:0003677
Lele25g1838 851 Gene3D - 711 804 - -
Lele25g1838 851 CDD B3_DNA 127 228 IPR003340 GO:0003677
Lele25g1838 851 Pfam B3 DNA binding domain 128 229 IPR003340 GO:0003677
Lele25g1838 851 MobiDBLite consensus disorder prediction 809 851 - -
Lele25g1838 851 MobiDBLite consensus disorder prediction 451 481 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1838 Lele-ChrLele25 26160654 26169983 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1838 97 809 B3 DNA Binding Superfamily AT5G37020 55.074 0.0 666
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lele25g1838 AUX_IAA 1.2e-06 CL0072