Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1832 ATGTTCATACACTTTAAACGTACTGGATGATCATGTCTTGGCCTTTGGTTTTCTCATGCGACAACTGTCTTAGCGTTATATGCCATTATCAATGATTTTTGGTTCTCTCTTCGCCATCTCTGCGAATCCCATTTCCTTCTCTCCCTTCCTTCGATCTCCGAAGCCACCATGCTTAGTACAATTTTCAGAAGATCTTGTTCCTTAGTCTCAAGGCGCGCTTTCGCCGCCTCCACGTTGATCCAGTATCAGCATCACCTCACCTTATCAGTCTCCGGCTATGGTGCGGTTGCTGGTAGTGAGCTTCGGCCATCCTCCTCCAACTTGTTCGGTTCCGGTGGGTTCAAGTCAAGTGCATTTCATTCACAAGCGGGGCCGTTGAATTTCCGGGCGTCGTTGGTTTCTCGTGCCGAGTATGCTGTTGATGATTACCCCTTCGAAGAAGGGCCCAAGGGAAACAATGATGATGGCCTTGATATAGCGAAGCTCGGTATTTCTCAGGATATTGTCTCTGCTTTGGCCAAGAGAGGCATATCGAAGCTCTTCCCGATACAGAGAGCTGTACTGGAACCTGCCATGCAAGGTTGTGATATGATTGGTCGAGCTAGAACAGGAACTGGGAAAACTCTTGCTTTTGGGATCCCTCTTATGGACAAGATCATTCAGTATAATGCTAAGCATGGACGAGGAAGGGATCCTCTTGCTTTGGTTTTGGCTCCAACTAGAGAACTTGCTCGGCAGGTTGAAAAGGAATTCGCTGAGTCAGCACCTAATTTGGATACAATTTGTGTTTATGGGGGAACACCCATTTCCCGCCAAATGAGGCAGCTTGACTATGGTGTTGATATTGCAGTTGGCACACCTGGTCGAATTATTGATCTTCTTAATAGAGGTGCTCTAAATTTGAAGGACATTCAGTTTGTTGTTCTTGATGAAGCTGATCAGATGCTTCAAGTTGGCTTTCAGGAAGATGTTGAAAAAATCTTGGAGAGGTTGCCTCCCAAACGCCAAACTCTTATGTTCTCAGCAACAATGCCATCTTGGATAAGGCAGATTTCTCGCAATTACTTAAATGATCCATTAACCATTGATCTTGTTGGAGATTCTGATCAGAAGTTGGCAGATGGAATTACGTTATACTCAATTGCCTCAGATATGTATGGAAAAGCAGGAATTATTGAAACTCTAGTAACTGAACACGCAAAAGGAGGAAAGTGTATTGTTTTCACCCAAACGAAACGTGATGCTGATCGACTATCATATTCCATGTCAAGAAGCCTTAGGTGTGAGGCCTTGCATGGAGATATCTCACAAGCTCAGAGGGAAAGAACTCTTTCTGGCTTTAGAGAAGGCCATTTCAATGTTTTAGTAGCCACTGATGTTGCTTCACGTGGGCTTGACATACCAAATGTTGACCTTGTAATACATTTTGATCTTCCCAATAATTCAGAGATATTTGTTCATCGATCGGGACGGACAGGTCGAGCTGGGAAGAAAGGAACTGCCATCCTTATTTATTCTCAAGATCAGACCAGAGCTGTCAAGATTATTGAGCGTGATGTTGGCTGCAGATTTTCTGATCTACCGAGAATTACTGTTGAAGGTGAATCAGTAGGCATGTTTAATAGCATGGGTGGTGGTCGATTTAGCAATTCTGGAGGTATGCAGGATCGTAGATTTGGTGATTCAGGTTTTGGCCGTAGTTCTGGATTTGGCCGCTCCAGCTTTGGTAATTCTGATGAGAGGGGAAGGTATGGTGGACCTAATTCTGGTCGTTTTGGTGGCGTTGGATCAAGTCAACCACGGAGTGGGTTTGGGGGATCATTTGGTAATTCTTCAGGTGAAAGCTCTGGTTATGGTTCCTTTGGTGGCTTTGGCAGATCTAGCGTAGATCGGTCAGGGAGCACTGGAGGATTTGGATTTAGTCGTCCAAGTGGTGGCACTAGATTTGGTGGTTCGGATCGTCCTGGTGGTTTTGGCTCGGGTCAATCTAGTGGATTTGGTGACAGAACAGTGGGAGAAGGCCCTTCTGATTTTTTGGCATCTAGGCTTTCTCCCCACATGTTACAAAGGATGCATGAGATTATGTCATAG 2091 0.4505 MFIHFKRTGXSCLGLWFSHATTVLALYAIINDFWFSLRHLCESHFLLSLPSISEATMLSTIFRRSCSLVSRRAFAASTLIQYQHHLTLSVSGYGAVAGSELRPSSSNLFGSGGFKSSAFHSQAGPLNFRASLVSRAEYAVDDYPFEEGPKGNNDDGLDIAKLGISQDIVSALAKRGISKLFPIQRAVLEPAMQGCDMIGRARTGTGKTLAFGIPLMDKIIQYNAKHGRGRDPLALVLAPTRELARQVEKEFAESAPNLDTICVYGGTPISRQMRQLDYGVDIAVGTPGRIIDLLNRGALNLKDIQFVVLDEADQMLQVGFQEDVEKILERLPPKRQTLMFSATMPSWIRQISRNYLNDPLTIDLVGDSDQKLADGITLYSIASDMYGKAGIIETLVTEHAKGGKCIVFTQTKRDADRLSYSMSRSLRCEALHGDISQAQRERTLSGFREGHFNVLVATDVASRGLDIPNVDLVIHFDLPNNSEIFVHRSGRTGRAGKKGTAILIYSQDQTRAVKIIERDVGCRFSDLPRITVEGESVGMFNSMGGGRFSNSGGMQDRRFGDSGFGRSSGFGRSSFGNSDERGRYGGPNSGRFGGVGSSQPRSGFGGSFGNSSGESSGYGSFGGFGRSSVDRSGSTGGFGFSRPSGGTRFGGSDRPGGFGSGQSSGFGDRTVGEGPSDFLASRLSPHMLQRMHEIMS 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1832 696 FunFam ATP-dependent RNA helicase RhlE 150 365 - -
Lele25g1832 696 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 158 537 - -
Lele25g1832 696 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 188 362 IPR014001 -
Lele25g1832 696 Pfam Helicase conserved C-terminal domain 391 496 IPR001650 -
Lele25g1832 696 MobiDBLite consensus disorder prediction 592 641 - -
Lele25g1832 696 Gene3D - 158 366 IPR027417 -
Lele25g1832 696 MobiDBLite consensus disorder prediction 548 696 - -
Lele25g1832 696 CDD DEADc 168 363 - -
Lele25g1832 696 Gene3D - 377 535 IPR027417 -
Lele25g1832 696 SMART ultradead3 176 379 IPR014001 -
Lele25g1832 696 Pfam DEAD/DEAH box helicase 181 348 IPR011545 GO:0003676|GO:0005524
Lele25g1832 696 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 391 535 IPR001650 -
Lele25g1832 696 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 231 517 IPR027417 -
Lele25g1832 696 SMART helicmild6 416 496 IPR001650 -
Lele25g1832 696 CDD SF2_C_DEAD 398 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1832 Lele-ChrLele25 26118581 26126243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1832 162 528 Eukaryotic Initiation Factors Gene Family AT3G19760 32.800 3.93e-66 222