Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1830 ATGCCCAACACCAATGTCGTTTCACACAACACTCTTCTCTCAGGCTACTTCAGTTCTGGTTTGGTTCCGGAAGCCTTGGAAGTCTTCTCTTCCACACCCACGAAGGATTCTCGTTCATCCCGATGGGTATACGTATTCCATAGTACTACCCTTTTGCGATTTGAGTTCTGGGCATCAAGTTCATGGGTGTATGCGAATTGTGGGGTTATTGAGGATGCGAGGAAAGTGTTCGATGAAATGCCCATGAGAGAGACTTGGTTACTTGGAATGCTTTGGTTTCTTGCTACTCTAGATTGTGGTTTAATTGACAGTGCATTGGTATTGTTTGAGGAGATTCAATATAAGGATGTGTTTGCATGGACCACAATTGTTACTGGTCTGTCACAGAGTGGACATATGGACGAAGCCATGTGGCTCTGTTATGAAATGCAATTGGCTGATGTAGAACCGAATTCCTTCACCTTTGGCGGCATGCTTGGTGCCTGCGCTGCAAGAAACACCTTGCATAGAGGAAGACAACTCCATGGTGTTGCTATAAACGCATGTAGTCACAGGGGTCTGGTACAAGAAGGTTGTCGCTACTTCAATGGCATGATTCATGAATATATGATCAAACCCAAAATTGAGCATTATATATGTATGGTTGACTTGCTTGGAAGATCAGGGCTGCTTGAGGAAGCTGAGGCTCTTCTTCTTCAAATGCCTTTCAAAGCTGATGCTGTAATGTGGAGCACACTACTGGGAGCCTGCAAGCTGCATGGAAATTTAACAATGGCGAAGCGAATTTCTGGAGATCTTCACATGGTAGGACCTTGGAATTCATCAAACTATGTGCTTCTTGCCAATTCATATGCTTTTATGGGTGAATGGAGGGAAACATTAGAGATTAGGGAAATGGGGAATTTAAAGGGATTGAAGAAGAGTTTGGGATGTAGTTGGATTGAAACTGTCCTTTTTTGGTTGGGAATTTGGGGTTCTCTCAGTCTCGGGGGTTTTAGTGATGAGCTGCATGCACTTCCTGTCAATTTGCTTGCTGATCCGTTGTTTCCCCCCTTGGATTCTCTTTTCGCAATTCCTTTGGCTATTGAACTTGTTTTTGATCGGATGTCGATGAATTGTGCATTCCATCGGGAAATCTTTTTGTCAATCAGGAACTTTTCAAATGAAACAGTTTCACACAGTGTCCTGGAAGAAAAAGACCAAGGACAAAATGCTGATAGAATCCATAAATCAAGTGGCAATGAATGTGATGATGCATCTTCAAGTGAGAAAGAGTTTGATATGAACATGGATGCTCAGTATCATAGTGATGGTGAACCAGATGCTAGACTGCAAAATGAGGCTACAGCTGATGGGGTTGGTAACATCCAGTCTACTGGAAGTAAAACTGCTATGGTTGGAAGGTGGGGTTCAACTTTTTGGAAGGACTGTCAGCCTATGAGCCATCAGAATGGGCAGGAATATGGGCAAGAATCACAAAGCGGATCAGACTATAGAAATGCAGAAGGGGCTGAAGATAATTCATCCGATGGAAGAGGGGAAAGATTAGATTCAGAAGATGATGATGGGCAGAAAGAAGCAGGAAAAGGTCCAAGAGGCCATTCTGATGTGCCTGCTGAGGAGATGTTGTCTGATGAATATTATGAGCAGGAAGAACACAGTGATTCATTGCATTACAGGGGGATTCATCAACCAACTGGATCAAGTTCATGGCCTCAACGGATGTCTAATACGGTCAATAGTCGTGCAAATAGGAATTCTAGGATTTCAGATGTTGTTGAAGATGACGATGGTGATGATGCTAATGATAATGACGAGGGTGATGCTGATTATGAAGAAGAGGATGAAGCAGATGATGATCCTGATGATGTGGACTTTGAGCCTGCAACAAGTGTTCGTTCTGCAAACAAGTGTGTTGTGATATGTGCTTGTATGGTGAATTTGGTTGGAGCAAGATGCTTCACTTTAGTGTTTATCCATGGACTTCTTTTAGAGTATGATAGAGATTGGGAGGGTGAAGAATCAGATGAAGATGATGATAGTGATGATAATCTAGATGTTTCAGATGACGATGATACCTACTATGCAAGAAAACCAACAGGTAGGCAACGTGTCAAAGTGGGACGAACTGTAAAACCTGCAAGAGAATGCAAATCATTTGCTGCATCTGGTCGGCAAAGAAAACCTAAAACATCTTTTGAAGAGGATGAGTCAACAGCAGAGGATTCTGAGAGTGAAAGTGATGATGATTTCAAAAGCATGAGAAAGAGAGGTGCAAATGCTCGCAAGAATAATGGCTGTTCTTCTGCAGCTGCAAGTTTTTCTGGCCGGAACAGGGAGGTTCGCACTTCTAGTAGGACTGTTAGGAAGAAGGTGTCATATGTTGAAAGTGAAGAAAGTGAAGAAGCAGATGAAGGGAAGAAGAAGAAGAAGTGTTCTTGTAGCGATTTGTCCCGATATGTTAGGTTGTGTTATTCACATGAAGAACTTGAAGAGGAAGATGGTGACTCCATTGAAAAGCTCAGTGGTTTTAAGAAGGTTTTGAATTATACGAAGAAAGTGACGGAGGACATCAGGTACAGGAACACAATCTCAAGAGAGGAGGTGGAAAGAATCATTGCAGATAGAATCAGCAAAGATAACTCTGGCAATGTTAACATAGAATATTTGGTCAAGTGGCAAGGGCTGTCTTATGCTGAAGTGACTTGGGAGAAGGACACAGATATTGCTTTTGCTCAGCATGTTATTGATGAGTACAAGGCTCGTGATGCTGCAATGTCAGTTCAAGGAAAGATGGTAGATATACAACGCAAGAAGAGTAAAGCAAGTTTGAGGAAGCTTGATGAACAGCCTGAGTGGTTGAAGGGTGGGAAGCTTCGTGATTATCAACTTGAGGGTTTGAATTTTCTTGTTAACAGTTGGAGAAATGACACAAATGTTATTTTAGCTGATGAAATGGGTCTTGGTAAAACTGTTCAGTCAGTATCAATGCTTGGTTTTCTTCAGAATGCCCAGCAAATCCATGGTCCTTTTCTTGTAGTTGTCCCTTTGTCTACTTTGTCAAACTGGGCCAAAGAATTCAGGAAGTGGCTTCCTGATATGAATATTATTGTATATGTTGGTAATCGAGCAGGGCGAGAGGTTTGTCAACAGTATGAATTTTATAATGATAAAAAGGCTGGCATGCCTATAAAATTTAATGCCCTCTTGACAACATATGAAGTGGTTCTAAAGGATAAAGCTGTTCTCTCCAAGATTAAATGGAATTATTTGATGGTTGATGAGGCTCATAGACTGAAAAATAGTGAGGCTCAGTTGTACGCTACACTTTCAGAATTTAGCACCAAGAACAAATTGCTCATCACTGGCACTCCACTGCAAAACAGTGTTGAAGAGCTATGATTACTTTCTTTGTTTCCTAGGGCTTTGCTTCATTTCCTTGATCCTGATAAGTTCAAGAGCAAGGATGATTTTGTTCAAAACTATAAGAATCTGAGTTCGTTCAATGAGAATGAGCTTGCCAATCTTCATATGGAATTGAGGCCTCACATACTCCGAAGAGTCATCAAAGATGTGGAGAAATCATTGCCCCCAAAAATTGAGCGTATACTTAGAGTTGAAATGTATTACAAGTGGATTTTGGAACGTAACTTTCATGATTTGAACAAAGGAGTTCGTGGGAATCAGGTTTCTCTACTTAATATTGTGGTTGAATTAAAGAAGTGCTGCAACCATCCCTTCCTGTTTGAAAGTGCTGACCATGGTTATGGGGGGGACTCAGGAAGTAGTGATAGCAGTAAAATCGAGAGAATTGTCTTCAGCAGTGGGAAGCTTGTCATACTTGATAAGCTACTTGTTAGATTGCATGAGACTAAGCATCGTGTTCTGATTTTCTCTCAGATGGTTAGGATGCTGGATATACTGGGCGAGTATATGTCACTTAGAGGATTTCAATTCCAGAGGCTTGATGGCAGCACAAAGGCTGAGTTACGACAGCAGGCAATGGATCATTTTAATGCACCTGGTAGTGATGATTTTTGCTTCCTTCTTTCCACTAGAGCAGGAGGTCTGGGTATCAATCTTGCGACAGCAGACACTGTCATAATATTTGATTCAGACTGGAATCCCCAAAATGACCTCCAGGCCATGAGTAGAGCACATAGAATCGGCCAACAGGAAGTTGTTAACATATATAGATTTTTGACAAGCAAAAGCGTTGAGGAAGATATTTTGGAACGAGCTAAGAAAAAGATGGTCCTCGACCATTTGGTTATTCAAAAATTAAATGCAGAGGGTAGACTGGAGAAGAAAGAAGCCAAAAAAGGAGGAGGCCTTTTTGACAAAAATGAGCTGTCAGCAATTTTAAGATTTGGAGCAGAGGAGCTTTTTAAGGAAGAAAGAAATGATGAGGAGAGTAAGAAACGACTTTTAAGTATGGATATAGATGAAATTCTTGAAAGAGCAGAGAAGGTTGAAGAGAAGGAAGCAGAGGGAGAGCAAGCGCATGAACTATTGAGTGCCTTTAAGGTTGCCAATTTCTGCAATGATGAAGATGATGGGAGTTTCTGGAGTCGTTGGATAAAACCTGAGGCGATAGACCAAGCTGAAGAAGCTTTGGCTCCACGTGCTGCAAGGAACATTAAAAGCTATGCAGAGCCCAATCAATCCGAAAGAAGTAGTAAACGAAAAAAGAAAGAACCTGAGCCTTCTGAGCGAGTTCAGAAGCGCCGGAAAGCAGAGTATTCAGCTCCTGCAACGCCAATGATTGTGGGAGCATCAGCTCAAGTGAGGAGTTGGTCCTATGGGAATGTATCTAAAAGAGATGCACTACGATTTTCTCGTGCAGTTATGAAATTTGGGAATGAGATCCAAATCCACTTAATAGCTGCTGAGGTTAGTGGAGCATTTGCAGCTGCTCCGCCTGAAGCTCAGATTGAACTCTTCAATTCTCTAATTGATGGCTGTAAAGAAGCAGCAGAACTAGGGAGTATGGACCCAAAGGGACCTCTTTTGGATTTTTTTGGTGTCCCAGTGAAGGCAAATGATCTGCTTAACCGTGTTCAAGAACTCCAACTCTTGGCAAAGCGCATTAGTAGATATGAAGATCCTATTGCACAATTTCGTGTTTTAACATATCTTAAACCTTCAAACTGGTCTAAAGGTTGTGGATGGAATCAAATTGATGATGCAAGATTGCTTCTTGGACTTCATTACCATGGATTTGGTAATTGGGAAAAGATACGATTAGATGAAAGGCTTGGCCTCATGAAGAAGATTGCACCAGTTGAACTTCATCACCATGAAACTTTCTTGCCACGAGCTCCCAATTTGAGAGATCGTGCTAATGCCCTTTTGGAACAAGAACTTGTGGTTCTTGGTGGTAAAAATGCCAATAGTAAAGGGGGACGCAAGGCTTCCAAGAAGGAGAGGGAAAATCTTACTAACATTCCTGTTGCACGTGGTTCAGAGAATAGAAAATTAAGTTCTTCTAAAGTTAATGTCCAAACGAGAAAGGATAGCTCCCTGAGGCCCCAGAGGATTGAACCAATAGTAAAAGAAGAGGGTGAAATGTCTGACAACGATGAAGTGTATGAGCAGTTCAAGGAAGTGAAATGGATGGAATGGTGTCAAGATGTGATGATTGATGAAATGAAAACCTTGAAACGTCTGCACAGGTTGCAGACAACCAGTGCCAATCTTCCAAAGGAAAAGGTACTTTCCAAAATCCGCAATTATTTACAGCTTCTTGGGCTGAGGATAGATCAAATTGTGTCAGATCATGAAGAGGAACCTTACAAGCAAGATAGGATGACTACGCGATTGTGGAACTATGTCTCTACCTTCTCCCATCTTTCAGGGGAGAGGCTGCATCAAATCTATTCCAAACTCAAACAAGAGCAACAAGATGAGGCTGGGGTTGGCCCCTCTCACATCAATGGGTCAGTATCTGGTCCGTTTCGTAGGATCCCTCACCATATGGAGAGGCAAAGAAGATACAAAAATGTGAGTTCCTATCAAATGCCAGAACAAGTTCACAATACAGGAAAATCTGAGGCTTGGAAACGGAGGAGAAGAGGAGAAAGTGACGGTCATTTTCAGGGTCAGCCACCACCTCAGAGAGCTATGGGTAATGGAGTCCAAATATCTGACCCTAACTCACTGGGGATTCTTGGGGCTGGACCCTCCGATAGACGTTTTGGTAGCGAGAAAACTTATAGGACACGACCTGGTGGAGCTCCTCCAAGACAGGGTTTCTCCTCAGGCATAAAATAG 6273 0.4207 MPNTNVVSHNTLLSGYFSSGLVPEALEVFSSTPTKDSRSSRWVYVFHSTTLLRFEFWASSSWVYANCGVIEDARKVFDEMPMRETWLLGMLWFLATLDCGLIDSALVLFEEIQYKDVFAWTTIVTGLSQSGHMDEAMWLCYEMQLADVEPNSFTFGGMLGACAARNTLHRGRQLHGVAINACSHRGLVQEGCRYFNGMIHEYMIKPKIEHYICMVDLLGRSGLLEEAEALLLQMPFKADAVMWSTLLGACKLHGNLTMAKRISGDLHMVGPWNSSNYVLLANSYAFMGEWRETLEIREMGNLKGLKKSLGCSWIETVLFWLGIWGSLSLGGFSDELHALPVNLLADPLFPPLDSLFAIPLAIELVFDRMSMNCAFHREIFLSIRNFSNETVSHSVLEEKDQGQNADRIHKSSGNECDDASSSEKEFDMNMDAQYHSDGEPDARLQNEATADGVGNIQSTGSKTAMVGRWGSTFWKDCQPMSHQNGQEYGQESQSGSDYRNAEGAEDNSSDGRGERLDSEDDDGQKEAGKGPRGHSDVPAEEMLSDEYYEQEEHSDSLHYRGIHQPTGSSSWPQRMSNTVNSRANRNSRISDVVEDDDGDDANDNDEGDADYEEEDEADDDPDDVDFEPATSVRSANKCVVICACMVNLVGARCFTLVFIHGLLLEYDRDWEGEESDEDDDSDDNLDVSDDDDTYYARKPTGRQRVKVGRTVKPARECKSFAASGRQRKPKTSFEEDESTAEDSESESDDDFKSMRKRGANARKNNGCSSAAASFSGRNREVRTSSRTVRKKVSYVESEESEEADEGKKKKKCSCSDLSRYVRLCYSHEELEEEDGDSIEKLSGFKKVLNYTKKVTEDIRYRNTISREEVERIIADRISKDNSGNVNIEYLVKWQGLSYAEVTWEKDTDIAFAQHVIDEYKARDAAMSVQGKMVDIQRKKSKASLRKLDEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIVYVGNRAGREVCQQYEFYNDKKAGMPIKFNALLTTYEVVLKDKAVLSKIKWNYLMVDEAHRLKNSEAQLYATLSEFSTKNKLLITGTPLQNSVEELXLLSLFPRALLHFLDPDKFKSKDDFVQNYKNLSSFNENELANLHMELRPHILRRVIKDVEKSLPPKIERILRVEMYYKWILERNFHDLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSGSSDSSKIERIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILGEYMSLRGFQFQRLDGSTKAELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFLTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGGGLFDKNELSAILRFGAEELFKEERNDEESKKRLLSMDIDEILERAEKVEEKEAEGEQAHELLSAFKVANFCNDEDDGSFWSRWIKPEAIDQAEEALAPRAARNIKSYAEPNQSERSSKRKKKEPEPSERVQKRRKAEYSAPATPMIVGASAQVRSWSYGNVSKRDALRFSRAVMKFGNEIQIHLIAAEVSGAFAAAPPEAQIELFNSLIDGCKEAAELGSMDPKGPLLDFFGVPVKANDLLNRVQELQLLAKRISRYEDPIAQFRVLTYLKPSNWSKGCGWNQIDDARLLLGLHYHGFGNWEKIRLDERLGLMKKIAPVELHHHETFLPRAPNLRDRANALLEQELVVLGGKNANSKGGRKASKKERENLTNIPVARGSENRKLSSSKVNVQTRKDSSLRPQRIEPIVKEEGEMSDNDEVYEQFKEVKWMEWCQDVMIDEMKTLKRLHRLQTTSANLPKEKVLSKIRNYLQLLGLRIDQIVSDHEEEPYKQDRMTTRLWNYVSTFSHLSGERLHQIYSKLKQEQQDEAGVGPSHINGSVSGPFRRIPHHMERQRRYKNVSSYQMPEQVHNTGKSEAWKRRRRGESDGHFQGQPPPQRAMGNGVQISDPNSLGILGAGPSDRRFGSEKTYRTRPGGAPPRQGFSSGIK 2090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1830 2090 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 971 1143 IPR014001 -
Lele25g1830 2090 SMART ultradead3 955 1161 IPR014001 -
Lele25g1830 2090 MobiDBLite consensus disorder prediction 394 444 - -
Lele25g1830 2090 FunFam Photoperiod-independent early flowering 1 929 1209 - -
Lele25g1830 2090 Pfam Chromo (CHRromatin Organisation MOdifier) domain 868 922 IPR023780 -
Lele25g1830 2090 FunFam Chromodomain-helicase-DNA-binding protein 2 isoform 1 1197 1421 - -
Lele25g1830 2090 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 5 39 IPR002885 -
Lele25g1830 2090 SUPERFAMILY Chromo domain-like 868 922 IPR016197 -
Lele25g1830 2090 SMART chromo_7 865 924 IPR000953 -
Lele25g1830 2090 Pfam Helicase conserved C-terminal domain 1277 1390 IPR001650 -
Lele25g1830 2090 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1190 1466 IPR027417 -
Lele25g1830 2090 Pfam PPR repeat 211 234 IPR002885 -
Lele25g1830 2090 Pfam PPR repeat 7 30 IPR002885 -
Lele25g1830 2090 MobiDBLite consensus disorder prediction 1555 1579 - -
Lele25g1830 2090 Gene3D - 1197 1421 IPR027417 -
Lele25g1830 2090 CDD CD2_tandem 868 921 - -
Lele25g1830 2090 MobiDBLite consensus disorder prediction 394 462 - -
Lele25g1830 2090 SMART helicmild6 1306 1390 IPR001650 -
Lele25g1830 2090 MobiDBLite consensus disorder prediction 1966 2090 - -
Lele25g1830 2090 Coils Coil 1474 1501 - -
Lele25g1830 2090 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 459 2013 - -
Lele25g1830 2090 Gene3D Tetratricopeptide repeat domain 63 174 IPR011990 GO:0005515
Lele25g1830 2090 Pfam E motif 255 315 IPR046848 -
Lele25g1830 2090 FunFam pentatricopeptide repeat-containing protein At2g33680 175 317 - -
Lele25g1830 2090 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 116 150 IPR002885 -
Lele25g1830 2090 MobiDBLite consensus disorder prediction 2015 2030 - -
Lele25g1830 2090 MobiDBLite consensus disorder prediction 1796 1827 - -
Lele25g1830 2090 MobiDBLite consensus disorder prediction 672 785 - -
Lele25g1830 2090 Gene3D - 950 1196 IPR038718 -
Lele25g1830 2090 MobiDBLite consensus disorder prediction 593 625 - -
Lele25g1830 2090 Pfam SNF2-related domain 978 1248 IPR000330 GO:0005524|GO:0140658
Lele25g1830 2090 MobiDBLite consensus disorder prediction 476 502 - -
Lele25g1830 2090 ProSiteProfiles Chromo and chromo shadow domain profile. 867 931 IPR000953 -
Lele25g1830 2090 Pfam PPR repeat family 115 163 IPR002885 -
Lele25g1830 2090 MobiDBLite consensus disorder prediction 1543 1580 - -
Lele25g1830 2090 FunFam protein CHROMATIN REMODELING 5 isoform X2 869 921 - -
Lele25g1830 2090 MobiDBLite consensus disorder prediction 474 628 - -
Lele25g1830 2090 MobiDBLite consensus disorder prediction 762 781 - -
Lele25g1830 2090 CDD SF2_C_SNF 1267 1401 - -
Lele25g1830 2090 MobiDBLite consensus disorder prediction 503 541 - -
Lele25g1830 2090 SMART DUF4208_2 1858 1963 IPR025260 -
Lele25g1830 2090 MobiDBLite consensus disorder prediction 672 689 - -
Lele25g1830 2090 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1280 1431 IPR001650 -
Lele25g1830 2090 Gene3D Tetratricopeptide repeat domain 175 322 IPR011990 GO:0005515
Lele25g1830 2090 Gene3D - 854 922 - -
Lele25g1830 2090 Coils Coil 1420 1440 - -
Lele25g1830 2090 MobiDBLite consensus disorder prediction 561 587 - -
Lele25g1830 2090 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 946 1187 IPR027417 -
Lele25g1830 2090 Pfam Domain of unknown function (DUF4208) 1870 1962 IPR025260 -
Lele25g1830 2090 Gene3D - 1687 1792 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1830 Lele-ChrLele25 26079656 26105828 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1830 99 316 Glycoside Hydrolase AT3G49170 37.615 4.98e-40 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lele25g1830 SNF2_N 2.3e-54 CL0023