Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1821 ATGGGCCAAGACTCTGTAGCAAAGCGATGGCCGATGGGCAATAAGCTGAGTGCACAGAGACTTGGGCCTTTTTCTTTAAAAACTTCTGTTGGTTTTCTTCCATCTATGAGGGGCGAATTGCAATCAGAAGATAACAAAGTTTCTAGGGAGAAAAATAAGAAAAGGAGGCTTAAAACACCAGCTCAGGTGATGGCCCTGGAAAAATTTTATGATGAGCACAAATATCCCACGGAAGAAATGAAATCGGAACTTGCTGAGGAGTTAGGCTTGACTGAAAAGCAAGTATCTGGATGGTTTTGCCACAGAAGGTTAAAAGATAAAAGATTGTTGAAAGATGAAGCATATGCTAATGGACGACAAGATCGTTCAAGTGGTGTCATCCAAGACCATGTAAGTGGATTAGGGCAAGATTCATGTGGAAGCACTAAACATGGTGATTATAAGCATCTTGATCTGAAAGAGGTTGAGAGTCATGGCCTCTATGGCAATGACTTTTCTGTTGCAGATATGACATATGAACGTAATAGTCACTATAATGAAGATGATGGTGGAATGGATAACACATCTTCTGAGAGTAGCTCATCTTTACGAGATCAATTGTTCTCTAAAGGTCAGGATCCATATAATATGGAGCCTTCTAAATATCTGACACCTAACAGAGCTCTGCCACCTTTAGTTCCCAAAGCTGCAATTAACACTGGATATAAACCATCAGGATATTTGAAAGTGAAGGGTGAGATAGAAAATGCTGCTATAACTGCTGTCAAGAAGCAATTAGGAAGGAACTATATGGAAGATGGTCCACTGCTTGGTGTAGAATTTGATTCAGTTCCTCCGGGAGCATTTGAGTGCCAAATTGCAGATCCAGTTGATGAATCATTCCATACTGAGAATCCTGCTCTTTCCAGTCCTCCAGAAGTTTCTGCCATGAAAAGGCAACCCGCCTTTAACCATAGGTATGACTCCAAATATAGTTCCCATGATTTACATATGGAAGTAGGAGATTTTGGCTCCTTGCATGGCACTGACTTGCTGGATAAGAAACCCCGCCAGCACAAGCGAGGCCGGACATTTCAGAGTTATACCAATCATTTACCTCGTAGGAACTCCTCCCTGGAGTTGTATGAAGATCCCACTGGAGAAGTGCCTGCTTATAATACAATGGGCTCTAAACATGGTGAAGGGATGAGATCTGATTCTGCTTCTAACCATCGTGAACACTTTAAAGGGGACCTTGTGGTTAAGCAGACAGATTCACTTCGGCATTGCTATGATAATGTCAATCCAAAGAAAATTCAGAGGATTGAACATGTAAAATCTAAGCCTTCAAATTCATTAAAAAGTTCTCGCATTTCTCTTGATACTGAACAAAGAGGATTGTCTTCAAGGATAGTAAAGGTTCACTATCTAGCTGTGACTTATCTTTGCTTTCTGATTCTTCCAAATGAAACCATGATTGCAAAAGAAGTTAAAGATGATCTTTCTCAACAACAAAATCTGAAACATGCACTAGTAGCTGAGATGCAACCTCAGAAAAATCGGAGGTCTGTAACAGAGATACTTTCTAGTTTTAGTGAGGATGAAACCGCTGAAACCAGTTCTCCGCTAGACTAA 1614 0.4064 MGQDSVAKRWPMGNKLSAQRLGPFSLKTSVGFLPSMRGELQSEDNKVSREKNKKRRLKTPAQVMALEKFYDEHKYPTEEMKSELAEELGLTEKQVSGWFCHRRLKDKRLLKDEAYANGRQDRSSGVIQDHVSGLGQDSCGSTKHGDYKHLDLKEVESHGLYGNDFSVADMTYERNSHYNEDDGGMDNTSSESSSSLRDQLFSKGQDPYNMEPSKYLTPNRALPPLVPKAAINTGYKPSGYLKVKGEIENAAITAVKKQLGRNYMEDGPLLGVEFDSVPPGAFECQIADPVDESFHTENPALSSPPEVSAMKRQPAFNHRYDSKYSSHDLHMEVGDFGSLHGTDLLDKKPRQHKRGRTFQSYTNHLPRRNSSLELYEDPTGEVPAYNTMGSKHGEGMRSDSASNHREHFKGDLVVKQTDSLRHCYDNVNPKKIQRIEHVKSKPSNSLKSSRISLDTEQRGLSSRIVKVHYLAVTYLCFLILPNETMIAKEVKDDLSQQQNLKHALVAEMQPQKNRRSVTEILSSFSEDETAETSSPLD 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1821 537 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 38 536 - -
Lele25g1821 537 Gene3D - 41 125 - -
Lele25g1821 537 MobiDBLite consensus disorder prediction 511 537 - -
Lele25g1821 537 CDD homeodomain 53 108 IPR001356 GO:0003677
Lele25g1821 537 SUPERFAMILY Homeodomain-like 47 113 IPR009057 -
Lele25g1821 537 MobiDBLite consensus disorder prediction 182 202 - -
Lele25g1821 537 MobiDBLite consensus disorder prediction 37 58 - -
Lele25g1821 537 Pfam Homeodomain 53 108 IPR001356 GO:0003677
Lele25g1821 537 MobiDBLite consensus disorder prediction 509 537 - -
Lele25g1821 537 MobiDBLite consensus disorder prediction 176 208 - -
Lele25g1821 537 MobiDBLite consensus disorder prediction 118 142 - -
Lele25g1821 537 ProSiteProfiles 'Homeobox' domain profile. 49 109 IPR001356 GO:0003677
Lele25g1821 537 SMART HOX_1 51 113 IPR001356 GO:0003677
Lele25g1821 537 MobiDBLite consensus disorder prediction 121 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1821 Lele-ChrLele25 26002418 26010474 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1821 38 537 Homeobox Transcription Factor Family AT4G03250 40.968 2.46e-80 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Lele25g1821 Homeodomain 9.5e-18 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele25g1821 25 26002418 26010474 Lele27g0256 27 2067448 2082324 hybridization
Lele25g1821 25 26002418 26010474 Lele28g1864 28 22058315 22063335 hybridization