Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1817 ATGTGGCCCGGGGGTTCTAGGTCAGTCAACTTTGGTCATTCTGAGATGGGCATGGTGGGCCTTCGAGATGTATTTGTGGTGGCGCCTGCTTCTTCGTATCATAACGACGTCGTCACGCCTGATCCTCACAACGCCGCTACCATCCACGGTGTCGGCGTTATTCCACTCCTCACGGCGGCTCCTTGTCTTGACGGTGACACAAGCAACATGCTCAATCTCAGCAGTCATAATCGAAGCCGTAGCGGTGGAATTCAGTTCTGGCAGGATCATTACTTGAAGAAGCAAGGCCCCCCCGAACACAACGGTACGACTAGCTCCGGCAATCTAGCTCACGGCGGCGGCGGCGGCGGCGGCGGAGGGTTAAGCGCGTCGGCTTTGAGCTCGGGAGGTATAACCTGCCAAGACTGTGGCAATCAAGCGAAGAAAGATTGTAGTCATAGAAGGTGCAGAACGTGCTGCAAGAGCCGAGGTTTTGGTTGCCCTACTCACGTGAAGAGCACGTGGGTTCCCGCTGCTCGTCGGAGGGAACGTCATCTTATGGCCGCCACCGCTTCAGCCGGTGTTGGGTTCAGTGGGGCTACATCCGTCGCCAAGAAGCCTAGACTCGTCACCTCTCAAACCACAACCACCTCCCATACTTCTACTTCCAACACAACCCCTCCTCGAAGCTTCGACACTAGCTCTAGCCATCAAGGTGCGAGTTTCAAAGAGTCATTGCCAGGGCAAGTAAGTGCGCCGGCGGTGTTCAAGTGCGTTCGTGTAACGGCGGTGGATGATGGGGACAACGAATATGCTTATCAAGCAGTTGTGAACATTGGTGGCCATGTGTTCAAAGGGTTTCTGTATGATCAAGGGATTGAAAATAGAGAAGGCTATCCTAATCTCTCTGAGCTGCATTTGGGCGGGGGTGGTGGTGGAAACGGCGGAAGCAGCGGCTGTGCTGCAAGAAATGGAGCTACTTGTTCATCCCCAATGCTGGATCCTTCTGATATATACGCCGCTGCTTCAGGTGGGGCTTTCCTCGCTGGTTCAACCTATGGTAATACCATGAATTGA 1056 0.5417 MWPGGSRSVNFGHSEMGMVGLRDVFVVAPASSYHNDVVTPDPHNAATIHGVGVIPLLTAAPCLDGDTSNMLNLSSHNRSRSGGIQFWQDHYLKKQGPPEHNGTTSSGNLAHGGGGGGGGGLSASALSSGGITCQDCGNQAKKDCSHRRCRTCCKSRGFGCPTHVKSTWVPAARRRERHLMAATASAGVGFSGATSVAKKPRLVTSQTTTTSHTSTSNTTPPRSFDTSSSHQGASFKESLPGQVSAPAVFKCVRVTAVDDGDNEYAYQAVVNIGGHVFKGFLYDQGIENREGYPNLSELHLGGGGGGNGGSSGCAARNGATCSSPMLDPSDIYAAASGGAFLAGSTYGNTMN 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1817 351 TIGRFAM LRP1_Cterm: LRP1 C-terminal domain 239 286 IPR006511 -
Lele25g1817 351 TIGRFAM put_zinc_LRP1: putative zinc finger domain, LRP1 type 132 174 IPR006510 -
Lele25g1817 351 MobiDBLite consensus disorder prediction 197 238 - -
Lele25g1817 351 Pfam Domain of unknown function (DUF702) 130 287 - -
Lele25g1817 351 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 62 334 IPR007818 GO:0003700|GO:0006355
Lele25g1817 351 MobiDBLite consensus disorder prediction 93 121 - -
Lele25g1817 351 MobiDBLite consensus disorder prediction 198 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1817 Lele-ChrLele25 25953843 25955101 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1817 2 331 C2H2 Transcription Factor Family AT5G12330 50.000 6.04e-89 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Lele25g1817 DUF702 3.7e-62 No_clan