Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1810 ATGGGCAACTGTTGCTCCGGCAAGGGCAAGGATGCCCCGACCACCGACAACGACAAGGAAGGAGAAGCAAACGCCGACAACAACAACAACCCACAGAACAATAACAACAACAACAATGCAGGAGGAGGCAGCAAAACCACCTCTTCCAACCCTTCGCCAGCCAAGCCTTCTCCCGCGCGGTCCCCTCCTCCAGCCAAAAAAGGCCCGATCGGCACGGTCCTCGGCAGACCCATGGAAGACGTGAAGGCCACGTACAGCATTGGAAAGGAACTAGGACGAGGACAATTCGGGGTGACACATTTATGCACACATAAAACAACGGGTCAACAATTTGCATGCAAAACCATAGCCAAGAGGAAGCTTGTGAACAAAGATGATATAGAAGATGTACGTAGGGAGGTTCAAATCATGCACCATTTGGCTGGTCAACCTAATATTGTGGAGCTCAAAGGTGCGTACGAGGACAAGCAATCAGTTCATCTTGTCATGGAGCTCTGCGCTGGCGGCGAGCTCTTCGACCGGATCATAGCCAGAGGTCATTACACCGAACGAGCCGCGGCGTCGTTGTTGAGAAACATAGTTCAGATCGTCCATACTTGCCATTCCATGGGTGTCATACATAGAGATCTCAAGCCTGAGAATTTCCTCTTGCTTAATAAGGACGAGAATTCTCCTCTCAAAGCCACCGATTTCGGTCTATCCGTTTTTTACAAGCAAGGAGAAATATTTAAAGACATTGTTGGGAGTGCATATTACATAGCACCCGAGGTTTTGAGGAGGAAATATGGGCCAGAAGCTGATATATGGAGTGTTGGTGTTATGCTTTACATTCTTCTTTGTGGTGTTCCTCCATTTTGGGCAGAATCTGAGAATGGAATATTCAATTCCATATTAAGAGAGCAAGTTGACTTTTCAACGGATCCATGGCCAAGCATATCTCCTTCAGCAAAAGATCTAATAAGAAAAATGTTGAATTCAGATCCCAAGCAAAGGATCTCAGCCTTTCAAGTCTTAAATCACCCATGGATAAAGGAGGATGGAGAAGCACCAGATAAACCTCTTGATAATGCTGTGCTGAATAGGCTCAAGCAATTCAGAGCGATGAATCAGTTCAAGAAAGTTGCTCTGAAGGTAATTGCTGGGTGCTTATCGGAGGAAGAAATCATGGGGTTGAAGCAGATGTTCAAGGGAATGGACACAGACAATAGCGGATGCATAACAATTGAAGAGCTCAAGCATGGGCTTGCGAAGCAAGGCACAAAACTCAGTGAACAAGAAGTCAAGCAATTATTAGAAGCTGCTGATGCTGATGGGAATGGAACCATAGATTATGACGAGTTCATCACAGCAACATTGCATTTGAACCGAATCAACAAAGAAGAACATCTTTATACCGCTTTCCAATATTTTGATAAAGACAACAGCGGGTTCATAACGGTTGAAGAACTGGAGCAGGCACTACGAGAATATAACATGCATGATGGTAGGGACATCAACGAAATTTTATCAGAAGTTGATGCAGATAATGATGGTCGGATCAACTACGAGGAGTTTGCGGCAATGATGAGGAAAGGAAATCCAGAAGCCCAAACCAGGAAGAGACGAACAGATTCATTTGTTTAA 1623 0.451 MGNCCSGKGKDAPTTDNDKEGEANADNNNNPQNNNNNNNAGGGSKTTSSNPSPAKPSPARSPPPAKKGPIGTVLGRPMEDVKATYSIGKELGRGQFGVTHLCTHKTTGQQFACKTIAKRKLVNKDDIEDVRREVQIMHHLAGQPNIVELKGAYEDKQSVHLVMELCAGGELFDRIIARGHYTERAAASLLRNIVQIVHTCHSMGVIHRDLKPENFLLLNKDENSPLKATDFGLSVFYKQGEIFKDIVGSAYYIAPEVLRRKYGPEADIWSVGVMLYILLCGVPPFWAESENGIFNSILREQVDFSTDPWPSISPSAKDLIRKMLNSDPKQRISAFQVLNHPWIKEDGEAPDKPLDNAVLNRLKQFRAMNQFKKVALKVIAGCLSEEEIMGLKQMFKGMDTDNSGCITIEELKHGLAKQGTKLSEQEVKQLLEAADADGNGTIDYDEFITATLHLNRINKEEHLYTAFQYFDKDNSGFITVEELEQALREYNMHDGRDINEILSEVDADNDGRINYEEFAAMMRKGNPEAQTRKRRTDSFV 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1810 540 Gene3D - 351 527 - -
Lele25g1810 540 ProSiteProfiles EF-hand calcium-binding domain profile. 458 493 IPR002048 GO:0005509
Lele25g1810 540 ProSitePatterns EF-hand calcium-binding domain. 506 518 IPR018247 -
Lele25g1810 540 ProSiteProfiles EF-hand calcium-binding domain profile. 497 528 IPR002048 GO:0005509
Lele25g1810 540 FunFam Calcium-dependent protein kinase 1 87 170 - -
Lele25g1810 540 FunFam Calcium-dependent protein kinase 1 351 526 - -
Lele25g1810 540 ProSiteProfiles EF-hand calcium-binding domain profile. 422 457 IPR002048 GO:0005509
Lele25g1810 540 ProSitePatterns EF-hand calcium-binding domain. 399 411 IPR018247 -
Lele25g1810 540 FunFam calcium-dependent protein kinase 1 171 350 - -
Lele25g1810 540 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672|GO:0006468
Lele25g1810 540 SUPERFAMILY Protein kinase-like (PK-like) 84 348 IPR011009 -
Lele25g1810 540 SUPERFAMILY EF-hand 383 523 IPR011992 -
Lele25g1810 540 ProSitePatterns EF-hand calcium-binding domain. 435 447 IPR018247 -
Lele25g1810 540 CDD STKc_CAMK 85 342 - -
Lele25g1810 540 Gene3D Phosphorylase Kinase; domain 1 87 170 - -
Lele25g1810 540 PANTHER SERINE/THREONINE-PROTEIN KINASE 79 518 - -
Lele25g1810 540 SMART efh_1 390 418 IPR002048 GO:0005509
Lele25g1810 540 SMART efh_1 426 454 IPR002048 GO:0005509
Lele25g1810 540 SMART efh_1 462 490 IPR002048 GO:0005509
Lele25g1810 540 SMART efh_1 497 525 IPR002048 GO:0005509
Lele25g1810 540 ProSitePatterns EF-hand calcium-binding domain. 471 483 IPR018247 -
Lele25g1810 540 Gene3D Transferase(Phosphotransferase) domain 1 171 350 - -
Lele25g1810 540 MobiDBLite consensus disorder prediction 24 54 - -
Lele25g1810 540 MobiDBLite consensus disorder prediction 1 77 - -
Lele25g1810 540 ProSiteProfiles EF-hand calcium-binding domain profile. 386 421 IPR002048 GO:0005509
Lele25g1810 540 ProSiteProfiles Protein kinase domain profile. 85 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele25g1810 540 Pfam Protein kinase domain 85 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele25g1810 540 ProSitePatterns Protein kinases ATP-binding region signature. 91 118 IPR017441 GO:0005524
Lele25g1810 540 Pfam EF-hand domain pair 391 451 IPR002048 GO:0005509
Lele25g1810 540 Pfam EF-hand domain pair 460 523 IPR002048 GO:0005509
Lele25g1810 540 SMART serkin_6 85 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1810 Lele-ChrLele25 25883744 25887528 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1810 1 539 EF-hand Containing Proteins AT5G12180 78.519 0.0 896
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Lele25g1810 Pkinase 2.2e-76 CL0016