Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1789 ATGTCAAGTGGACCAACACACTGGTGTTATGAGTGTGGACATCCTATTGCGCTTGAAGGGAGAGAAGTCACTTGCCCTTATTGTCATGAAGGCTTTGTGCAAGAACTTAATGAGAGGCATGAGTTTCAACCATATAATGCTCTTGAAGAGTTTCGTCCCATGCCTGACTTTTTTGATGCCATACATGCCTTTATGGCACAAAGAGCTCCCGAACCAAGATTTGGGCTTATAGATGCTTTTGACAATTTCATGAGGCAGAGAATAGGTGGGCAATACCCCAACATTGATGGTAGACAAAGGTCTCCTAATGCACTATTTCCTGAATGGAGTCAGGATTTTTTCAATTCTGGCCCTTCTTTCGTATTTCATGGTACTGGAGGCGAACCGAGGCCTATTGATTTTGGCGGTTTATTAATGGCCCCGGGACTGGAAGCATTTATTCAACAGCTCACAATGAATGATCATAGAGGTCCTCCTCCAGCCTCACATTCTTCAATTGATGCAATGCCTACCATTAAGATCACACGAGCGCATCTTCGCTCTGATTCACATTGTCCAGTCTGTCAAGAAAAATTTGAGCTAGGCTCCGAGGTTCGGAAAATGCCCTGTAACCATATTTATCACTCTGACTGTATTGTTCCTTGGTTGGTTCAGCATAACTCTTGTCCTGTTTGCCGCGTTGAGCTTCCGCCTCCAGGACAGAGTAGTTCCCATGGTGGAACTCATGGAGGAAGGAATGTCAATAGCGGTAGTAACCGTCGTGATAGCTCAAGGAGGCAGAACCAAGGAGGGAGAAATCCACTATCAGCTTGGTGGCCATTCTGA 825 0.4545 MSSGPTHWCYECGHPIALEGREVTCPYCHEGFVQELNERHEFQPYNALEEFRPMPDFFDAIHAFMAQRAPEPRFGLIDAFDNFMRQRIGGQYPNIDGRQRSPNALFPEWSQDFFNSGPSFVFHGTGGEPRPIDFGGLLMAPGLEAFIQQLTMNDHRGPPPASHSSIDAMPTIKITRAHLRSDSHCPVCQEKFELGSEVRKMPCNHIYHSDCIVPWLVQHNSCPVCRVELPPPGQSSSHGGTHGGRNVNSGSNRRDSSRRQNQGGRNPLSAWWPF 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1789 274 CDD RING-H2_RNF126_like 185 226 - -
Lele25g1789 274 SMART ring_2 185 225 IPR001841 -
Lele25g1789 274 Pfam Ring finger domain 184 226 IPR001841 -
Lele25g1789 274 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 233 IPR013083 -
Lele25g1789 274 ProSiteProfiles Zinc finger RING-type profile. 185 226 IPR001841 -
Lele25g1789 274 MobiDBLite consensus disorder prediction 234 267 - -
Lele25g1789 274 SUPERFAMILY RING/U-box 165 232 - -
Lele25g1789 274 MobiDBLite consensus disorder prediction 232 274 - -
Lele25g1789 274 FunFam E3 ubiquitin-protein ligase RING1-like 148 232 - -
Lele25g1789 274 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 90 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1789 Lele-ChrLele25 25696875 25697699 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1789 110 258 C3H Transcription Factor Family AT1G68180 33.557 6.08e-24 95.1