Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1788 ATGTCAAGTGGACCAACACACTGGTGTTATGAGTGTGGACATCCGATTGCGCTTGAAGGGGGAGAAGTCACTTGCCCTTATTGTCATGAAGGCTTTGTGCAAGAACTTAATGAGAGGCATGAGTTTCAACCATATAATGCTCTTGAAGAGTTTCATCCCATGCCTGACTTTTTTGATGCCATACATACCTTTATGGCACAAAGAGCTCCCGAACCAAGATTTGGGCTTATAGATGCTTTAGACAATTTCATGAGGCAGAGAATAGGTGGGCAATACCCCAACATTGATGGTAGACAAAGGTCTCCTAATGCACGATTTCCTGAATGGAGTCAGGATTTTTTCAATTCTGGCCCTTCTTTCGTATTTCATGGTACGGGAGGCGAACCAAGGCCTATTGATTTTGGCAGTTTATTGATGGCCCCGGGACTGGAAGCATTTATTCAACAGCTCACAATGAATGATCATAGAGGTCCTCCTCCAGCCTCACATTCTTCAATTGATGCAATGCCTACCATTAAGATCACACGAGCGCATCTTCGCTCTGATTCTCATTGTCCAGTCTGTCAAGAAAAATTTGAGCTAGGCGCCGAGGCTAGGAAAATGCCCTGTAACCATATTTATCATTCTGACTGTATTGTTCCTTGGTTGGTTCAGCATAACTCTTGTCCTGTTTGCCGCGTTGAGCTTCCACCTCCAGGACAGAATAGTTCCCATGGTGGAACTCGTGGAGGAAGGAATGTCAATAGCAGTAGTAATAGTAGTAATCGTCGCGATAGCTCAAGGAGGCAGAACCAAGGAGGGAGAAATCCACTATCAGCTTGGTGGCCATTCTGA 834 0.4508 MSSGPTHWCYECGHPIALEGGEVTCPYCHEGFVQELNERHEFQPYNALEEFHPMPDFFDAIHTFMAQRAPEPRFGLIDALDNFMRQRIGGQYPNIDGRQRSPNARFPEWSQDFFNSGPSFVFHGTGGEPRPIDFGSLLMAPGLEAFIQQLTMNDHRGPPPASHSSIDAMPTIKITRAHLRSDSHCPVCQEKFELGAEARKMPCNHIYHSDCIVPWLVQHNSCPVCRVELPPPGQNSSHGGTRGGRNVNSSSNSSNRRDSSRRQNQGGRNPLSAWWPF 277
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1788 277 CDD RING-H2_RNF126_like 185 226 - -
Lele25g1788 277 SUPERFAMILY RING/U-box 165 232 - -
Lele25g1788 277 MobiDBLite consensus disorder prediction 234 270 - -
Lele25g1788 277 MobiDBLite consensus disorder prediction 233 277 - -
Lele25g1788 277 FunFam E3 ubiquitin-protein ligase RING1-like 148 232 - -
Lele25g1788 277 Pfam Ring finger domain 184 226 IPR001841 -
Lele25g1788 277 SMART ring_2 185 225 IPR001841 -
Lele25g1788 277 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 233 IPR013083 -
Lele25g1788 277 ProSiteProfiles Zinc finger RING-type profile. 185 226 IPR001841 -
Lele25g1788 277 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 96 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1788 Lele-ChrLele25 25680284 25681117 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1788 110 256 C3H Transcription Factor Family AT1G68180 33.333 1.80e-23 94.0