Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1785 ATGACGACGACTCTTCAGATGATCGAGGAGGACCAAGGGTTCGATCGGGAATCTTCCGACGAGTTACAGAAGATGAGGGGAAAGCCGTTTTCGTCTTCCTCGGAGCTCCACAAAGCAAAATCCAAGATCAAAACTAATGGAGCTTCAGGTTCAGGTTCATCGGTTCGAGTTTGTGATTTCTGTGGGAAACAGTTCAGTTCTGGAAAAGCCCTAGGAGGTCACAGAAGATATCATATTCAAGCTCAGAGAAAAATGGAGGCTCACCAACAACAAGAAAAGGTCAATCGTCTTCATCTTCATCATAATCAATATCCTTCTAATAATTATACCCTAAGAATCAAGCACAATAATAATAATGTCTCCGAGGATTTCATCAACGGCGGCGGTGGCGGCGGCGGCGATGATGATAATAATCTCATCAAATCTAATGCTGGGAATCTCAATTCTTCTTCGAGACCATCTTCTTTCCGTTGTGTTGTCTGCGACAAGGATTTCCCATCGAAGAAGTCACTTTTCGGCCATATGAGATCTCATCCTGAGAGAGAATGGAGAGGTATGAACCCTCCGTTCACTGATATTAACAACGCTTTAACTTCTTCTTCAGCGGAACAGTTCAAAGTAGTAGAAGATGATCAATATCACAATAACAACCAAAACAATAATAATAATGGATCTTTGTCTTCAAGTTTAGAAGAATCATCAGTTGTAGTTGATCTTTCTTCATCTTGTTCTGGGAGTAGCTGGGTTAAGAAAGATAGAAGAGGAAGAAGAAGCATTGGAGCTGCAGAAGCAGCTCAAACCCTTATGTATATGTATCTCTATGGTGATAACTACATTCATCTTCTTCCTCCTCGCGAGCTGCAGCCTCCTGCTGCAACAGAACTATTACCAGTGAAGAAAAGGAAGAAGAATAATGTGAACCATCTTGTTGGTTCTTCATCACCTGGGAAAAAACAAAGATTGGATGATTGCCAGGAAAAATTAGAGGAAGCTGAGAATGAGAATAATATCTGGGACATGAAAGTGATGAACTTGATGAAAGAGAAGAAGCTTAAGAGGAAGTTCAAGAAGAAGATGATCAAGTCAGAAGAAGCAGAAGCAGAAGGAGAATTGCTGATAAGAACTCTGAAGGAACAAGTGAAGTTATCATCATTACAAAGCTATGTATGCAGCATCTGTAACAAATCTTTCTCAAGTTTTCAAGCTTTAGGGGGACACACATCCAAACACAACAGAGAAAAGAACATAGTTATACGCAGCAAGGGCAAGGAAGCTGTGGAATTACAAAGAGAAGAAGAAGAAGACAAAGTTTGCATCAATGGAGCTTTGTCAAGTGCTGCAGGATTGAGCTGTGAAGAAGAGCCGGAAGAAGAAGAAGAAGGAGCGTTTCTGATTAGTAGTGAAGAGAGATTAGTGTTAAGTTCGAATGATCATGATGAGAATAACAGCAATCAAGAAGCAAGCCATGAATCTGGAGGTTCGAAAATACTAGATTTTGATCTGAATGTGCCTTATGTTTCGGAGCAGGAAGCAACTGAGATATAA 1545 0.4058 MTTTLQMIEEDQGFDRESSDELQKMRGKPFSSSSELHKAKSKIKTNGASGSGSSVRVCDFCGKQFSSGKALGGHRRYHIQAQRKMEAHQQQEKVNRLHLHHNQYPSNNYTLRIKHNNNNVSEDFINGGGGGGGDDDNNLIKSNAGNLNSSSRPSSFRCVVCDKDFPSKKSLFGHMRSHPEREWRGMNPPFTDINNALTSSSAEQFKVVEDDQYHNNNQNNNNNGSLSSSLEESSVVVDLSSSCSGSSWVKKDRRGRRSIGAAEAAQTLMYMYLYGDNYIHLLPPRELQPPAATELLPVKKRKKNNVNHLVGSSSPGKKQRLDDCQEKLEEAENENNIWDMKVMNLMKEKKLKRKFKKKMIKSEEAEAEGELLIRTLKEQVKLSSLQSYVCSICNKSFSSFQALGGHTSKHNREKNIVIRSKGKEAVELQREEEEDKVCINGALSSAAGLSCEEEPEEEEEGAFLISSEERLVLSSNDHDENNSNQEASHESGGSKILDFDLNVPYVSEQEATEI 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1785 514 SUPERFAMILY beta-beta-alpha zinc fingers 156 410 IPR036236 -
Lele25g1785 514 ProSitePatterns Zinc finger C2H2 type domain signature. 158 178 IPR013087 -
Lele25g1785 514 Pfam C2H2-type zinc finger 56 78 - -
Lele25g1785 514 Pfam C2H2-type zinc finger 388 412 - -
Lele25g1785 514 Pfam C2H2-type zinc finger 156 180 - -
Lele25g1785 514 Gene3D Classic Zinc Finger 57 178 - -
Lele25g1785 514 MobiDBLite consensus disorder prediction 139 155 - -
Lele25g1785 514 ProSiteProfiles Zinc finger C2H2 type domain profile. 156 183 IPR013087 -
Lele25g1785 514 MobiDBLite consensus disorder prediction 136 155 - -
Lele25g1785 514 MobiDBLite consensus disorder prediction 473 501 - -
Lele25g1785 514 ProSitePatterns Zinc finger C2H2 type domain signature. 390 410 IPR013087 -
Lele25g1785 514 ProSiteProfiles Zinc finger C2H2 type domain profile. 56 83 IPR013087 -
Lele25g1785 514 SUPERFAMILY beta-beta-alpha zinc fingers 55 81 IPR036236 -
Lele25g1785 514 MobiDBLite consensus disorder prediction 477 491 - -
Lele25g1785 514 MobiDBLite consensus disorder prediction 10 24 - -
Lele25g1785 514 PANTHER C2H2 TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY-RELATED 38 91 IPR044653 GO:0003700
Lele25g1785 514 MobiDBLite consensus disorder prediction 1 53 - -
Lele25g1785 514 Gene3D Classic Zinc Finger 366 442 - -
Lele25g1785 514 Coils Coil 314 368 - -
Lele25g1785 514 SMART c2h2final6 56 78 IPR013087 -
Lele25g1785 514 SMART c2h2final6 388 410 IPR013087 -
Lele25g1785 514 SMART c2h2final6 156 178 IPR013087 -
Lele25g1785 514 ProSiteProfiles Zinc finger C2H2 type domain profile. 388 415 IPR013087 -
Lele25g1785 514 ProSitePatterns Zinc finger C2H2 type domain signature. 58 78 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1785 Lele-ChrLele25 25643395 25644939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1785 58 189 C2H2 Transcription Factor Family AT2G26940 29.630 1.74e-11 63.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lele25g1785 zf-C2H2_6 4.3e-10 CL0361