Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1784 ATGGCCTCTGCCTCTGCCTCTGCATTCTTTCTAGCTCGGTGTGTGCGAAACGTGAAATTTGGTAACCAGTCTTTTGAGCTGTGCACTGGCACAACGTCTCGATTTGTTCGGCCATTGTGTACACAATCCTTCGCCGCGGTGAAAGTTTTGACAAGATGTGTTGATGAAACTTGGGAAGGTATGGAAAGAGATGATCTGAGTGCAACAGAGAGGTCAAATAGGGGCAAACAATGGCCTAGACGAAATGCTGAAAAAATAACCAGATTTCAGGTTGAAATAAGACTTGACAAGAATATTGTTGAAATTCAAATAAAAATAAGAACGATGAGCAACATGATGGGTGGAGGTGATGCTCCAAAGTTGCCCAAAGGTCGGCGGCCCGGGTTTGCAGTTGAAGAAGCAAGTTACAAAGGTAATGTTGGAAGAGAAGTACCTCTGAAGAAAGGCCCTTGGACAGCAGCTGAGGATGCGATTTTGTTAGATTATGTCAAAAAACATGGAGAAGGAAATTGGAATGCAGTCCAAAGGCACTCAGGCCTTACCCGCTGTGGGAAAAGCTGCCGTCTACGATGGGCAAATCACTTAAGGCCAGAATTAAAAAAGGGTGCATTTACTGAAGAGGAGGAGCATCGAATCATTGAGCTTCATGCTAGGATGGGAAACAAATGGGCTCGAATGGCAACAGAGTTGCCTGGACGTACAGATAATGAGATAAAGAATTACTGGAACACTAGAGTTAAGAGAATGGAACGAGCTGGATTACCAATTTATCCTCCTGAAATATGCCAGCGGGTACGCAGTCAAGAAAATTCGAATGTGGGTACTTTGATGAGTGGAGCCAACCAGCACTTTGATAGCCCACAAGATGGCTACTTCAATGTCCCAGATCTGGACTTCAAAGATTATGATGTCAGTCGAGCTTATCTACCATATGGTCCATCTATTTTTGATATTTATGAAAGCAGTCTGTTTCAACAAACTGTAGGCCCACCGCATAGTGATGTTTTATTGTTCGGAAACCCTCCTAAACGCCTTAGGGAGTCAGATATGCTTTATAATAGATTGGACAATTCTAGCGGTTGTATGATCCCGGCGTATGATAAGTTTGAGGATTATGCTTCTGGGCCACCCCATCTTTTGCCATCTCCAAGCAATCTGTCCTTTGACCCCAATGATCCATTTCGTGGTGATAATCATGGCAGCCATGCCACTTTAAATGGCACTATCTCTTCTTCGGCGCCCATACCCGAGGCAATGAAGTTGGAGCTCCCTTCACTCCAATATTTAGAAACTCAACAAGGTAGCTGGGATGCAAATGCATCCCCACTGCCTTCACTGGAGTCTGTTGACACATTGTTTCAGTCTTCTCCAGTTGAACAGTATCAGTCATGTAATGTTACTCCAGATAGTAGTGGTTTGTTAGAATCAATAATCTATGATAGCAAGCTTCCCAAGGCCTCAAATAATGATTCATTGTGGAAGATTCCTGATGAGTACCTACTGAATGTGGATAAAGCAGAGACAGAATGGGACCAACATGGGGGCATAAATTCACCCTTAGGTCACTCTTCTGCCTCAGTTCTTACAGATTATACTCATCCTGTTAGCATCTGCTCAGTTGATGACCCCTACTTAACTGAACACACAAAAGCGGGTCCTGAAATGAGGCAGGAAGCAATTTCGCAGGGTCCACCTTACGTTTCAAAAAGCAAAGAAACTTCTAATCATATAGACATAACAAGGCCGGATGCTTTGCTTGACATGTGTTGTTGGTCCAGGAATGATAGCGATGATGCTGTGGATGTTGGGATAATGGGATTTGACGAGAATTTCTTATATCAGATAAGCTGGCCTCATCAAATGTTTGAATATGCTGCAGCTGATGTTGCCTGA 1893 0.4363 MASASASAFFLARCVRNVKFGNQSFELCTGTTSRFVRPLCTQSFAAVKVLTRCVDETWEGMERDDLSATERSNRGKQWPRRNAEKITRFQVEIRLDKNIVEIQIKIRTMSNMMGGGDAPKLPKGRRPGFAVEEASYKGNVGREVPLKKGPWTAAEDAILLDYVKKHGEGNWNAVQRHSGLTRCGKSCRLRWANHLRPELKKGAFTEEEEHRIIELHARMGNKWARMATELPGRTDNEIKNYWNTRVKRMERAGLPIYPPEICQRVRSQENSNVGTLMSGANQHFDSPQDGYFNVPDLDFKDYDVSRAYLPYGPSIFDIYESSLFQQTVGPPHSDVLLFGNPPKRLRESDMLYNRLDNSSGCMIPAYDKFEDYASGPPHLLPSPSNLSFDPNDPFRGDNHGSHATLNGTISSSAPIPEAMKLELPSLQYLETQQGSWDANASPLPSLESVDTLFQSSPVEQYQSCNVTPDSSGLLESIIYDSKLPKASNNDSLWKIPDEYLLNVDKAETEWDQHGGINSPLGHSSASVLTDYTHPVSICSVDDPYLTEHTKAGPEMRQEAISQGPPYVSKSKETSNHIDITRPDALLDMCCWSRNDSDDAVDVGIMGFDENFLYQISWPHQMFEYAAADVA 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1784 630 Gene3D - 147 200 - -
Lele25g1784 630 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 196 250 IPR017930 -
Lele25g1784 630 SUPERFAMILY Homeodomain-like 145 242 IPR009057 -
Lele25g1784 630 SMART sant 200 248 IPR001005 -
Lele25g1784 630 SMART sant 147 197 IPR001005 -
Lele25g1784 630 CDD SANT 203 244 IPR001005 -
Lele25g1784 630 CDD SANT 150 195 IPR001005 -
Lele25g1784 630 FunFam Transcription factor GAMYB 203 249 - -
Lele25g1784 630 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 126 598 - -
Lele25g1784 630 Gene3D - 203 249 - -
Lele25g1784 630 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 143 195 IPR017930 -
Lele25g1784 630 ProSiteProfiles Myb-like domain profile. 143 195 IPR001005 -
Lele25g1784 630 Pfam Myb-like DNA-binding domain 201 244 IPR001005 -
Lele25g1784 630 Pfam Myb-like DNA-binding domain 148 195 IPR001005 -
Lele25g1784 630 ProSiteProfiles Myb-like domain profile. 196 246 IPR001005 -
Lele25g1784 630 FunFam MYB-related transcription factor 147 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1784 Lele-ChrLele25 25624132 25630071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1784 146 586 MYB Transcription Factor Family AT5G06100 37.553 6.08e-80 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lele25g1784 Myb_DNA-binding 2.7e-15 CL0123