Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1780 ATGGGAAATTCCTGTAGGAAACCCATTGCTCATGTGTCTTCCTCCAACATTTCTGGAAAGGCGAAGTCTCAAAGTGAGACAAGTAAGAATTCAAATTCTCCACAAGGAAAAGCTGCGTCACAAACCGTAGAACCAACTATCAGCAGATCCGTATCTTCTACTCTTAAATCCTTCACTTTCAATGATCTGAAAGAAGCCACAAGAAATTTCAGACAAGAGAACTTAATTGGGGAGGGAGGGTTTGGGTTTGTTTACAAGGGATGGATCGATGAGAACTCCTTCGCTCCCACGAGACCGGGTAGCGGGATCATGGTGGCCATCAAGAAACTTAAGCCAGAAAGCTTTCAAGGCCATAAGGAATGGCTTGCAGAAGTCAATTATCTAGGTCAACTTCACCATGAAAATGTAGTAAAACTTATTGGTTATTGCTCAGATGCTAAAAACAGGCTTCTAGTTTATGAGCTTATGCAGAGAGGGAGTTTGGAGAATCATTTATTCAGAAAAGGTGTTCAGCCCATATCCTGGGCTGCACGGATCAATATTGCAGTTGGCGTTGCTAGAGGATTAGCATTTTTGCATACCTTGGATGCAAATGTGATCTACCGTGACTTAAAGGCTTCTAATGTATTACTTGATTCAGACTTCAACTCAAAGCTTTCAGATTTTGGCTTGGCAAGAGATGGTCCTACCGGAGATAACACTCATGTTTCAACCAGAGTTATTGGAACTCGAGGTTATGCCGCACCTGAGTATGTAGCTACAGGTCACTTGACTCCGAGGAGCGATGTATACAGCTTTGGCGTTGTCTTGTTAGAGTTACTAACAGGGAGAAGGGTGGTAGAGGTCGACAAAGCCGGAAATGCCCGTGATAACCTGGTTGATTGGGCGATGCCATTTCTCAAAGGTGGCAAGCGGGTTTCGAGAATCATGGATTTGAGGTTAGGTGGCCAGTACTCCAAAAAAGGAGCTCAAGCTGCAGCTGCACTTGCATATCAATGCCTAAATGCAGATCCAAAATATAGACCAACTATGATACATGTTCTAGCCACGTTGGAAGAACTCCATTCCTCAAACACAATAATCCCAAGGACCCCACCAAAGTCTCAGTCTGGAAACGGTACCAGGAAGCATGCTCGTCATTCCCTGGAGTCAATGAGAAAAACACGCTGA 1170 0.4419 MGNSCRKPIAHVSSSNISGKAKSQSETSKNSNSPQGKAASQTVEPTISRSVSSTLKSFTFNDLKEATRNFRQENLIGEGGFGFVYKGWIDENSFAPTRPGSGIMVAIKKLKPESFQGHKEWLAEVNYLGQLHHENVVKLIGYCSDAKNRLLVYELMQRGSLENHLFRKGVQPISWAARINIAVGVARGLAFLHTLDANVIYRDLKASNVLLDSDFNSKLSDFGLARDGPTGDNTHVSTRVIGTRGYAAPEYVATGHLTPRSDVYSFGVVLLELLTGRRVVEVDKAGNARDNLVDWAMPFLKGGKRVSRIMDLRLGGQYSKKGAQAAAALAYQCLNADPKYRPTMIHVLATLEELHSSNTIIPRTPPKSQSGNGTRKHARHSLESMRKTR 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1780 389 Pfam Protein kinase domain 71 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele25g1780 389 MobiDBLite consensus disorder prediction 358 389 - -
Lele25g1780 389 FunFam Serine/threonine-protein kinase BIK1 37 155 - -
Lele25g1780 389 ProSitePatterns Protein kinases ATP-binding region signature. 76 109 IPR017441 GO:0005524
Lele25g1780 389 PANTHER OS01G0588500 PROTEIN-RELATED 25 355 - -
Lele25g1780 389 SUPERFAMILY Protein kinase-like (PK-like) 44 352 IPR011009 -
Lele25g1780 389 MobiDBLite consensus disorder prediction 1 46 - -
Lele25g1780 389 FunFam probable LRR receptor-like serine/threonine-protein kinase RKF3 156 359 - -
Lele25g1780 389 MobiDBLite consensus disorder prediction 358 372 - -
Lele25g1780 389 CDD STKc_IRAK 76 354 - -
Lele25g1780 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
Lele25g1780 389 Gene3D Phosphorylase Kinase; domain 1 41 155 - -
Lele25g1780 389 Gene3D Transferase(Phosphotransferase) domain 1 156 365 - -
Lele25g1780 389 SMART serkin_6 70 349 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele25g1780 389 ProSiteProfiles Protein kinase domain profile. 70 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lele25g1780 389 MobiDBLite consensus disorder prediction 8 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1780 Lele-ChrLele25 25578126 25581698 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1780 56 351 Glycoside Hydrolase AT3G07070 51.171 2.60e-99 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Lele25g1780 Pkinase 1.5e-48 CL0016