LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lele25g1748	ATGGAGTTCGTGGGCAAAACTGTCAAGAAGGAGGTCAAGGGGGTGGGGATTATCTCGGGAACAGCGAAATCTTTCGATTCATCGTTTGGGTTGGTTGGGTTCGTTTCCGAAGATGGTAATTCTGAGGAGCTTGAATCGTCTGAGGTGGCTTCTCTTGTTCAAGGTGAACCAGAGTTAGTAAAGGTGAAGCGCCGGGGAAGAAAACCCAAGAAGAGGCGTCGTTTGGAAACGAAGCATGATACCAGTGGAAGTCCAGGTAATATTGATGAGAATTTGGGTGTTTCCATGCTAAATGATTCTGAAGTTAGGGGGGATTCGGATGAAGGTGTTTGTTCTAGTGGGAATTTAGAAGAAAATGATGAATTAGATAGTGAGTTGAAGAGAAGCCCGGGTATGGCAAACGGGGCGGGAGGGAATTCGACTTTGGGAACTGGAATCATGGGGAATTTGAATTGGGGTGCCAACTCTAACGGGATCAAAGAAGTTCAACGGACGGAAAGCGTGTATGAAGAGAAATCCAAAGAAAGTATATCTACTAACGGTAATTCCAGCATAACGGATTGTGTAAAAGATGGGGTTGATTTGAATGCTAGACTTAACCTGAACGAGGCCCTGGATCTGAATGATGGGTGTAGTTCACATGTTAAGACTGAGTGTGGTTTGAAGAAAAGGGGCTGTATAGATTTAAATGTGGATGTGAATCATGAAATTGATGCCAGTGCGAACGTCACTGATTTAGGTTGTCCAACCGCTGAAGTGTCGAAGCGGGAATGTAATTTTGATTTGAATATGGAGGTACGTGATGAAGCTAAGGAAACTCAGGGTGATACTGCTGGAGACAAACTGTCAGATGGAGGTGGTTTGTTTGGTAAAATGGGGCAAAGCCCTAAGTCAGATACAGATTTTAATCGAAATTCTGTACAAGAGGGTATTGTTAAAAGGAATTTGGATGATATCACTAATTCGATCAAATTGGAGGGAATTGATGGTTTCCATGAGTATGCAGGTAAAGATGCTTCTGAGAGTTTGATTGAGGAAAAGGAAGATGGAGTTTGCAATGGAGGTACTGTGGCAATTGACTCTCTTGGGATTTCAAACGCTATTTCTGTTAAGGATTGTGATTCTGTGGAGGTTTGGCAGGAGCATAGCCCTTCTGGGGCTGGTATTGCTATAACTCATGAATGTCAAAATGAGCCAGAAAGCCAATATAAACAAGGAAGTGGCCGAAGGAAGAGAAGAAAACTATCAGACAATCTGAAAGCCACTCCAGAGACAGTTTTAAGGAGGAGTTCTCGCCGTGCATCAGCTCTAAAACGTGATTCATGCCCTGTAACATTGAATATGATGGATGATCCTTTGATGTCTCCAGGGCCTGGTGCCATAACAGAAGAAAAAGCAACTGTTTCTGGTTCTGAGCAGTATGAACAGTGCAGTGAATTTCCACCAAAGCTGCAAGTACCCCCTTCTTCTCAAAATTTGAACTTAGATAACATCCCTGTTCTTGATCTTTTTTCCATTTATGCTTGTTTGAGGTCCTTCAGTACTATACTATTTTTAAGTCCTTTTGAGTTGGAGGATTTTGTAACTGCACTGAAGAGTGTAAATCCTAACATATTATTTGACAACATTCATGTTTCTATTTTACAAACCCTTAGAAAGCACTTGGAATACCTTTCAAATGAGGGTTGCCAATCTGCATCCGATTGCCTGAGAAGTTTGAACTGGGATTTTTTGGATCTGGTCACATGGCCCATTTTTATGGCTGAGTATCTTCTGATTCATGGTTCTGGACTTAAAACTGGTTTTAATCTTAAGTACTTGATGTTTGGAGGTGACTACTACAAGCAGTCTGTAACTTTGAAGATTGAAATTCTTCAGTGCCTTTGTGATGATATGATGGAAGTGGAAGCAATAAGGTTGGAGCTTAACAGAAGATCTTTGGTGACTGAGGCTGATATGAGTTTTGATCAAAGTATGTATTTTGACATTTGCAAGAAAAGAAGAGCTCTAATGGACATGTCTGGCGGCTTTTCTCCGTCTGAGGAAATTGTTGATGTCACAAGTGACTGGAACAGTGATGAATGCTGTCTTTGCAAGATGGATGGAAGTTTAATATGTTGTGATGGTTGCCCTGCTGCATTCCACTCCAGGTGTGTAGGGGTTGCGAATGACCACTTACCTGAAGGTGACTGGTATTGCCCCGAGTGTGCAATTAGCAGACGTAAGCCTTGGATGAAACCACAAAAATCACTTCGAGGGGCAGACCTTTTAGGAATTGATCCTCATGGTCGTCTTTATTTTGATAGCTGTGGGTCAGATTCATCTGACACAAGATCATTGTTCAATTACTACCACATAAATGATCTGCTTGTGGTAATTGAAGTGCTAAAAGCGGCTGATGCTTTCTATGGTAGCATATTAATGGCAATCTGCAAGCGTTGGGATATTCCTTCTGACTTAAATGCTAGAAGGAACATGTATATGAAGACAGAATACTCTGCTATATATCCATCCTCAGCACCTTTTTCATCCTCAGAAGCATTCTTGGACAAGAATCAGGCTGCTGATCAAAGAAAGGATGAAGAAACTTCTACTTTACAACCTGTTGGCCAAGAGTTTGTCAAAGGTGAGAGACAGTTAGATTCAGTCATAACAACAGAAAGCCATTGTGTTGCTTCAGAGGTGTCATCTGATATCACAAAAATGAGGTCAGTCACTGATGATCCTCTAACACATGGACTCCATGATTCCAATAGATCCGATGGGGCCCTGAATCAGCCAGGAATACCAGAGAAATTGCACCGAGTCTCTCACTGTTCTTTGAGGTCTTGCCGCTTAGATACAAGCCATAAGGTAAACTTAACATCTGCAGGTATTGGTTATACTGCATCTGCTATGTCCACTGGGAATAGAGCTACTTCAGAAATGCCATGTGGAATTGACTACATAAACTATTACAGCTTTGCAAGAACGGCTTCATTAGTGGCAGAGGAGTTGGCACTTAAATCACCTGAAAAGATCAACAAGAGTATTGAAACGTCTGAAGAAGACTTAATTTCAGAACAAGTGAAGGCTATTATTAAGAAATCTACGAACTTCTACTGGCCAAGTTCTCAAAATATTAATGCAGCTGCCCAAAAGGAAAAATGTGGGTGGTGCTATATGTGCAGAGTTGAAAATGATGACGGAGATTGCTTGTTTAACTCTGTGGCTATGCGTGTTCAGGAAGTGTCTAAAAATGATCTAGTTGGGTTTCAACCAAAGAATCAGAATGCCCATCTTAGAGATGTCATATTTTATATTATCTCCCTTGAGAATCGATTACGGGGACTTCTATTGGGGCCTTGGTTGAGCCTCCGTCATTCTAAGAATTGGCGTAACAATCTTCTTAAGGCATCTGATGTTGCATCTATCAAATGCTCATTACTGACTTTAGAGTCCAATTTGCGGCCTCTTGCTCTTTCGGCAGACTGGTGGAAACATGTGGATTCTGTTGTTACCATGGGTTCGGCTTGTCATATTGTGGCCAGTTCACGCACATCTTGGAGGCATAGTATTGGAAGGAAGAGGGTAAGGTGCTCTGATGAGTCCAGTGCATCTTCAAATGCTAGTGGTTTGGGAGCATATTGGTGGAGAGGTGGTCGGCTTTCCTGTCATTTGTTTAATTGGAAGGTTCTGCCAAACTCTCTGGTTACCAAGGCTGCTAGACAAGTTAGAAAATTTTCAGCTGGGTGTACAAAGATACCTGGCATTCTATATCTCGAGAATTCTGATTCTTCAAAGAGAAGCAAATGTGTTGCTTGGAGAGCTGCTGTTGAGACATCAATTAGTGTGGAGCAACTTGCTATCCAGGTTAGAGAGCTTGATTCAAACATTAGGTGGCATGACATTGAGAATACTCATCCTCTATGTTTGTTGGACAAGGAATCCAGAAAATCAATCAGGCTGTTCAAAAAAGTAATTTTACGTAGGAAGAGCACTGAAAGGGAATCTGTAAAATATCTTCTTGATTTTGGGAAGAGAAGGGCTGTTCCAGATATTGTCAAGAAACATGGTTCTTTGTTGGAAGAATCCTCAAGTGACAGGAAAAAATATTGGCTGGAAGAACCTTATGTTCCCTTGCATCTCATAAAGAATTTTGAGGACAAAAGAATTGCTCGCAAGTCCAAGGAAGTTAAACCAGGCGAAGTTCTGGTGAATAGAGGATTTAATAAGAGGTCTACCCAAAGACGGGGGTTTTCATATTTGTTTGCTAGGATGGAAAGGCCTACCTATCATCAGTGTGGCCACTGCAACAAAGATGTTCCAACCAGGTATCTCTTGTGCTCACTTTTGCTTCAAAATGTTTTGATTCACTTCCATATCCTGGAAGCTGTGAGCTGCCAGCACTGTAATGGATGCTTCCATAAGAGGCATGTCAGAAAATCTGGTGGCACTGCTGAATGCACATATTCATGTCAGAGATGCCTGGATGGGATGAGTGCAAATTCTAATTCTAAAAGGAGAAAACTAGAACCAAAGCAAGGGAATATTCAGTCACAAAAGGGTCGAAAGGCCCCCTCAGTGGGTAGACCAGCTAAGCAAAAAGGAAGCAAAAAGCTATTGAGTAATAGGCGGCAAGGAAAATCTCAAACCAATAAAAAGGTCCCACCAAATATGCCTCTTCGTCGTTCAGCCAGGAAGGCCAAATGCTTGTACGTGCAAAAGAAAAGGAACGTAGGACGTAAAAAAGGAAAGAAAAGTAAATCCAAGAAGATGGCATCTACTAGGAAGCCCAAGGAAACTACTACTTGTTCTAAGACGGCGGTAACTTTTGAGCGTAAGAAAAGAACTCATGTCTGTAACAGTTACTGGCTTAATGGTCTTAGGTTGTCGACAAAGCCAAATGATGAACAAGTAATGCTGTTTAAGGAGAAAAAGCATCTTGCTCCCTCAGAAGGTTTTTCTAGCACCTTTGATCAACCTAAATGTCATCTTTGTTGTGGAGATGGGTGCACTTTGAATTATATTGCTTGTGAAATCTGTGGAGAGTGGTTTCATGGGGATGCTTTTGGACTCACTCTAGAGAATGTCAGACAACTAATTGGATTTAGGTGTCATGTTTGTCTTGATAGGATTGCACCAATCTGTCCCCACAAGAATAGTAATGCCTTGACTAATGCTGAAATCAAAGCTGCAACTGATTGTGCAGAGCCATTGAGTCAGATCCCAAGTCCTGTCAAAGTCGGAAAAGCTATCCGCTTAATGATCTTCATATACATCAAGTTTGTACAAGATTCTTATATCATATCTGGCTTCACTGCAGGAAAAAGGAAAGGAAAAGAAATTAAAAGCTCACTTTCAGGGTTTGTGGCAAGTGATGATAAATCATTTGGCCATTATGTTTTTGGGGGTCCATAG	5400	0.415	MEFVGKTVKKEVKGVGIISGTAKSFDSSFGLVGFVSEDGNSEELESSEVASLVQGEPELVKVKRRGRKPKKRRRLETKHDTSGSPGNIDENLGVSMLNDSEVRGDSDEGVCSSGNLEENDELDSELKRSPGMANGAGGNSTLGTGIMGNLNWGANSNGIKEVQRTESVYEEKSKESISTNGNSSITDCVKDGVDLNARLNLNEALDLNDGCSSHVKTECGLKKRGCIDLNVDVNHEIDASANVTDLGCPTAEVSKRECNFDLNMEVRDEAKETQGDTAGDKLSDGGGLFGKMGQSPKSDTDFNRNSVQEGIVKRNLDDITNSIKLEGIDGFHEYAGKDASESLIEEKEDGVCNGGTVAIDSLGISNAISVKDCDSVEVWQEHSPSGAGIAITHECQNEPESQYKQGSGRRKRRKLSDNLKATPETVLRRSSRRASALKRDSCPVTLNMMDDPLMSPGPGAITEEKATVSGSEQYEQCSEFPPKLQVPPSSQNLNLDNIPVLDLFSIYACLRSFSTILFLSPFELEDFVTALKSVNPNILFDNIHVSILQTLRKHLEYLSNEGCQSASDCLRSLNWDFLDLVTWPIFMAEYLLIHGSGLKTGFNLKYLMFGGDYYKQSVTLKIEILQCLCDDMMEVEAIRLELNRRSLVTEADMSFDQSMYFDICKKRRALMDMSGGFSPSEEIVDVTSDWNSDECCLCKMDGSLICCDGCPAAFHSRCVGVANDHLPEGDWYCPECAISRRKPWMKPQKSLRGADLLGIDPHGRLYFDSCGSDSSDTRSLFNYYHINDLLVVIEVLKAADAFYGSILMAICKRWDIPSDLNARRNMYMKTEYSAIYPSSAPFSSSEAFLDKNQAADQRKDEETSTLQPVGQEFVKGERQLDSVITTESHCVASEVSSDITKMRSVTDDPLTHGLHDSNRSDGALNQPGIPEKLHRVSHCSLRSCRLDTSHKVNLTSAGIGYTASAMSTGNRATSEMPCGIDYINYYSFARTASLVAEELALKSPEKINKSIETSEEDLISEQVKAIIKKSTNFYWPSSQNINAAAQKEKCGWCYMCRVENDDGDCLFNSVAMRVQEVSKNDLVGFQPKNQNAHLRDVIFYIISLENRLRGLLLGPWLSLRHSKNWRNNLLKASDVASIKCSLLTLESNLRPLALSADWWKHVDSVVTMGSACHIVASSRTSWRHSIGRKRVRCSDESSASSNASGLGAYWWRGGRLSCHLFNWKVLPNSLVTKAARQVRKFSAGCTKIPGILYLENSDSSKRSKCVAWRAAVETSISVEQLAIQVRELDSNIRWHDIENTHPLCLLDKESRKSIRLFKKVILRRKSTERESVKYLLDFGKRRAVPDIVKKHGSLLEESSSDRKKYWLEEPYVPLHLIKNFEDKRIARKSKEVKPGEVLVNRGFNKRSTQRRGFSYLFARMERPTYHQCGHCNKDVPTRYLLCSLLLQNVLIHFHILEAVSCQHCNGCFHKRHVRKSGGTAECTYSCQRCLDGMSANSNSKRRKLEPKQGNIQSQKGRKAPSVGRPAKQKGSKKLLSNRRQGKSQTNKKVPPNMPLRRSARKAKCLYVQKKRNVGRKKGKKSKSKKMASTRKPKETTTCSKTAVTFERKKRTHVCNSYWLNGLRLSTKPNDEQVMLFKEKKHLAPSEGFSSTFDQPKCHLCCGDGCTLNYIACEICGEWFHGDAFGLTLENVRQLIGFRCHVCLDRIAPICPHKNSNALTNAEIKAATDCAEPLSQIPSPVKVGKAIRLMIFIYIKFVQDSYIISGFTAGKRKGKEIKSSLSGFVASDDKSFGHYVFGGP	1799

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Lele25g1748	1799	SUPERFAMILY	FYVE/PHD zinc finger	1650	1705	IPR011011	-
	Lele25g1748	1799	MobiDBLite	consensus disorder prediction	1496	1596	-	-
	Lele25g1748	1799	SUPERFAMILY	FYVE/PHD zinc finger	679	740	IPR011011	-
	Lele25g1748	1799	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	686	753	IPR013083	-
	Lele25g1748	1799	ProSiteProfiles	DDT domain profile.	497	557	IPR018501	-
	Lele25g1748	1799	MobiDBLite	consensus disorder prediction	396	435	-	-
	Lele25g1748	1799	SMART	testlast3	497	557	IPR018501	-
	Lele25g1748	1799	MobiDBLite	consensus disorder prediction	1562	1587	-	-
	Lele25g1748	1799	ProSitePatterns	Zinc finger PHD-type signature.	695	736	IPR019786	-
	Lele25g1748	1799	MobiDBLite	consensus disorder prediction	1537	1551	-	-
	Lele25g1748	1799	Pfam	PHD-finger	695	737	IPR019787	-
	Lele25g1748	1799	Pfam	DDT domain	500	553	IPR018501	-
	Lele25g1748	1799	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	1650	1708	IPR013083	-
	Lele25g1748	1799	ProSiteProfiles	Zinc finger PHD-type profile.	692	739	IPR019787	-
	Lele25g1748	1799	SMART	PHD_3	694	737	IPR001965	-
	Lele25g1748	1799	SMART	PHD_3	1656	1703	IPR001965	-
	Lele25g1748	1799	PANTHER	PHD FINGER FAMILY PROTEIN	2	1708	-	-
	Lele25g1748	1799	MobiDBLite	consensus disorder prediction	60	136	-	-
	Lele25g1748	1799	Pfam	WSTF, HB1, Itc1p, MBD9 motif 1	611	642	IPR028942	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Lele25g1748	Lele-ChrLele25	25136349	25150951	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lele25g1748	1	1715	PHD Transcription Factor Family	AT5G12400	39.101	0.0	1067

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TR	DDT	Lele25g1748		DDT	1.1e-11	No_clan