Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1734 ATGCTTACGTGGTTTAGGGCATTAGGCTGTTATAATGTTGAGCAGTTGGTAATTGTCATTCATGTTTCTATTACTTTTATGAGTTCCTTCTCCATTACACGGAAAAAAACACCCTTCCAAAAGCACAGAGAAGAAGAAGAGGCAAAGAAGAAGAGAGCAGAAGATGAAACTGCACGCTTATATGCTGAGTTTGTTGAGTCATTTCAAGGTGATACCACTCCTGGATCAAAGGCTTTTGTTCGAGGAGGAACAATTAATCCCAATGAAAAATTGAAAGCAGATTCTGAAGGTGAAAAGTCCAAAGATGGGGTTTCTGGTTCAAAGAAGGGAAGTAGGTATGTTCCATCTTTTATACCTCCTCCTTTGGCAACAAAGGGAAAAGAATCTGAGAAGAAAGAGGAGAAGCCTAAGGAGAAGGAGAAAGGAAAGTCACGGAACATAGATAACTTTATGGAGGAGTTAAAACAGGAGCAAGAGATGAGGGAGAGGCGAAATCAAGAACGTGAACATTGGCGTGATGGGCGCAACACAGAACATTCTACTATTAGTCGCTTTGATGAATTGCCTGATGATTTTGATCCAAGTGGAAAACTGCCTGGATCATTTGATGATGGTGATCCACAAACTACGAATCTATATGTTGGAAATCTCTCTCCAAAGGTTGATGAAAATTTTCTTCTCCGAACTTTTGGAAGATTTGGACCCATTGCTAGTGTGAAGATAATGTGGCCTAGGACAGAGGAGGAACGAAGGCGGCAAAGAAACTGTGGCTTTGTTGCTTTCATGAATAGAGCCGATGGACAGGCTGCTAAAGACGAAATGCAAGGAGTTGTGGTTTATGAGTATGAATTGAAAATTGGATGGGGTAAGTCTGTTGCTCTCCCATCACAAGCGCTGCCTGCACCCCCGCCGGGGCAGATGGCCATCAGGAGTAAGGAGGGTGCCACTGTGATCTTGTCTGGGCCATCTGGTCCATCAGGTCCACCAGTAACTTCTGTGCCAAATCAGAACTCTGAACTGGTTCTCACTCCTAATGTTCCTGATATAATGGTTACACCTCCTGAAGATGAGCATCTAAGGCATGTGATTGATACCATGGCTTTGTATGTTTTGGACGGGGGATGTGCTTTTGAACAAGCTATTATGGAGAGGGGCCGTGGCAATCCTCTTTTCAATTTCTTGTTTGAGCTTGGCTCCAAGGAACATACTTACTATGTTTGGAGACTATACTCATTTGCTCAGGGTGACACTCTTCAAAGATGGCGGACAGAACCCTTCATTATGATAACTGGTAGTGGAAGATGGATTCCTCCATCATTGCCCTCTGCAAAAAGTCCAGAACACGAAAAGGAGTCTGGCACCACACATGCTGCAGGAAGAAGCAGGCGTGTGGAACCTGAAAGAACACTGACTGATGCACAAAGGGATGAATTTGAGGATATGCTGCGTGCTTTAACAGTAGAAAGGAGTCAAATAAAAGAAGCTATGGGGTTTTCTTTGGATAATGCTGATGCAGCTGGAGAGATAGTTGAAGTTTTAACAGAATCCTTGACACTTAAAGAGACCCCAATTGCAAGTAAAGTTGCAAGGCTCATGCTTGTCTCTGATGTTCTTCATAATAGTAGTGCTCCAGTAAGGAATGCATCTGCGTATCGTACCAAGTTTGAAGCAACATTGCCTGACATAATGGAGAGTTTCAATGACTTATATCGTAGCGTAACAGGACGTATGACTGCTGAGGCCCTAAAGGAACGAGTGCTAAAAGTTCTGCAAGTGTGGGCAGATTGGTTTCTCTTTTCTGATGCTTATGTGAATGGCTTACGAGCCACATTTCTTCGTTCTGGCAACTCCGGTGTTATACTATTTCATTCCATCTGTGGTGATGCACCTGAAATTGAGAAAAATATACATTCTGAAGATACAGTTGAGGGCAGCAAGAGCATCCAAGATTCTGCATTGGCAATGGGCCGAGGAGCTGCAACGAAGGAACTAATGTCTCTTCATCTTGCTGAGCTGGAAAGACGATGTCGTCACAATGGATTGTCACTTGTGGGTGGTAGGGAAATGATGGTTGCACGGTTGCTTAGCCTGGAGGAGGCAGAAAAGCAAAGGGGTTATGAACTAGATGATGAATTGAAATATGCTCAGAACCAAGCAAGTTCTGGGAGGTATTCAAGTAGTCGGAGAGAAACAAGCATTGAGTCTGAACCAGTGGGTTTCTCTGGATGGAACCAGCATGGGGAGGATGATTTACCCTCAGAAGGCAAAGGTTCAGTATCGCTGGCACAAACTTTGCCCATTCCACACCCTGAATTCAAAGCCTTTACAAAAAAAGAGAACAATGATCCAGTTTTACCAGCTTCTAAATGGGCTCGTGAGGATGATGATAGTGATGATGAACGAAAGGGTCATGGAAAGGGTTTGGGATTAAGCTACTCATCTTCTGGTAGTGAGAATGCAGGTGATGGTACCATTAAGGCAGATGAGCTGGAGTCTGTTGCTGATACAAGCATTTCCACACCAGCTGATAGTGGAATGAATGAAGAGCAGAGGCAAAAGTTGAGACGCCTAGAAGTTGCTTTAATTGAATACCGGGAGTCTCTTGAAGAGAGGGGAATAAAGAATTTGGAAGAAATTGAGAGAAAAGTCACACTGCACAGGAAACGGCTGCAAGCAGAGTTTGGATTATCAGATTCTGGAGAAGATGGTCAAGGAAGTAGAAGAACATCTACAGAGAGGAGGGACATCTCAAGAAAACGCCACCGCAGTAGTAGTCGAAGTCATAGTCCACCACGAAGATCATCGGGCAGAGACAGGGAGAGGGAACATGATGCAGACAGGGACCGAGATAGACAGAGAGATAGAGGAGGTTATGATTTTGATAACGATAGAGGTAGGGACCGGGAGAAAAGTGGAAGCAGAGAAAGGGATGATCATGAAAGGGAGAGAGGCAGAGATAGGGACCGGAGGAGACGGACGAAATAA 2985 0.4422 MLTWFRALGCYNVEQLVIVIHVSITFMSSFSITRKKTPFQKHREEEEAKKKRAEDETARLYAEFVESFQGDTTPGSKAFVRGGTINPNEKLKADSEGEKSKDGVSGSKKGSRYVPSFIPPPLATKGKESEKKEEKPKEKEKGKSRNIDNFMEELKQEQEMRERRNQEREHWRDGRNTEHSTISRFDELPDDFDPSGKLPGSFDDGDPQTTNLYVGNLSPKVDENFLLRTFGRFGPIASVKIMWPRTEEERRRQRNCGFVAFMNRADGQAAKDEMQGVVVYEYELKIGWGKSVALPSQALPAPPPGQMAIRSKEGATVILSGPSGPSGPPVTSVPNQNSELVLTPNVPDIMVTPPEDEHLRHVIDTMALYVLDGGCAFEQAIMERGRGNPLFNFLFELGSKEHTYYVWRLYSFAQGDTLQRWRTEPFIMITGSGRWIPPSLPSAKSPEHEKESGTTHAAGRSRRVEPERTLTDAQRDEFEDMLRALTVERSQIKEAMGFSLDNADAAGEIVEVLTESLTLKETPIASKVARLMLVSDVLHNSSAPVRNASAYRTKFEATLPDIMESFNDLYRSVTGRMTAEALKERVLKVLQVWADWFLFSDAYVNGLRATFLRSGNSGVILFHSICGDAPEIEKNIHSEDTVEGSKSIQDSALAMGRGAATKELMSLHLAELERRCRHNGLSLVGGREMMVARLLSLEEAEKQRGYELDDELKYAQNQASSGRYSSSRRETSIESEPVGFSGWNQHGEDDLPSEGKGSVSLAQTLPIPHPEFKAFTKKENNDPVLPASKWAREDDDSDDERKGHGKGLGLSYSSSGSENAGDGTIKADELESVADTSISTPADSGMNEEQRQKLRRLEVALIEYRESLEERGIKNLEEIERKVTLHRKRLQAEFGLSDSGEDGQGSRRTSTERRDISRKRHRSSSRSHSPPRRSSGRDREREHDADRDRDRQRDRGGYDFDNDRGRDREKSGSRERDDHERERGRDRDRRRRTK 994
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1734 994 Pfam Surp module 360 412 IPR000061 GO:0003723|GO:0006396
Lele25g1734 994 MobiDBLite consensus disorder prediction 91 106 - -
Lele25g1734 994 CDD RRM_SR140 209 292 IPR035009 -
Lele25g1734 994 SMART cwf21_2 846 895 IPR013170 -
Lele25g1734 994 SUPERFAMILY RNA-binding domain, RBD 203 290 IPR035979 GO:0003676
Lele25g1734 994 Coils Coil 873 893 - -
Lele25g1734 994 MobiDBLite consensus disorder prediction 931 987 - -
Lele25g1734 994 MobiDBLite consensus disorder prediction 438 467 - -
Lele25g1734 994 Gene3D - 123 293 IPR012677 -
Lele25g1734 994 Gene3D Surp module 348 417 IPR035967 GO:0003723|GO:0006396
Lele25g1734 994 MobiDBLite consensus disorder prediction 444 467 - -
Lele25g1734 994 Coils Coil 475 495 - -
Lele25g1734 994 Coils Coil 147 167 - -
Lele25g1734 994 MobiDBLite consensus disorder prediction 833 847 - -
Lele25g1734 994 SUPERFAMILY Surp module (SWAP domain) 336 417 IPR035967 GO:0003723|GO:0006396
Lele25g1734 994 Coils Coil 847 867 - -
Lele25g1734 994 SMART surpneu2 360 414 IPR000061 GO:0003723|GO:0006396
Lele25g1734 994 MobiDBLite consensus disorder prediction 788 806 - -
Lele25g1734 994 MobiDBLite consensus disorder prediction 125 179 - -
Lele25g1734 994 Gene3D - 470 617 IPR008942 -
Lele25g1734 994 Coils Coil 43 63 - -
Lele25g1734 994 MobiDBLite consensus disorder prediction 716 739 - -
Lele25g1734 994 MobiDBLite consensus disorder prediction 72 179 - -
Lele25g1734 994 SMART rrm1_1 211 287 IPR000504 GO:0003723
Lele25g1734 994 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 212 284 IPR000504 GO:0003723
Lele25g1734 994 Gene3D - 846 897 - -
Lele25g1734 994 PANTHER RNA PROCESSING PROTEIN LD23810P 27 926 - -
Lele25g1734 994 SUPERFAMILY ENTH/VHS domain 474 612 IPR008942 -
Lele25g1734 994 MobiDBLite consensus disorder prediction 716 852 - -
Lele25g1734 994 Pfam CID domain 477 605 IPR006569 -
Lele25g1734 994 SMART 558neu5 477 612 IPR006569 -
Lele25g1734 994 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 210 291 IPR000504 GO:0003723
Lele25g1734 994 ProSiteProfiles SAP motif profile. 664 698 IPR003034 -
Lele25g1734 994 ProSiteProfiles CID domain profile. 470 615 IPR006569 -
Lele25g1734 994 MobiDBLite consensus disorder prediction 891 994 - -
Lele25g1734 994 ProSiteProfiles SURP motif repeat profile. 362 405 IPR000061 GO:0003723|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1734 Lele-ChrLele25 25001435 25018357 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1734 207 287 Eukaryotic Initiation Factors Gene Family AT1G71770 32.099 3.71e-06 48.9