Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1718 ATGAAGTGGGAAATGGATATTCTCTCATCATCTTCTCATATGTCCAATCCCACTTGGCTCATTCAAGACGCCATGATGAACACAACAACAACAACAAAATGGACTGCTTCAGAGAACAAGTTGTTTGAGAATGCTCTTGCAGTGTATGATAAAGACACACTAGATCGGTGGGTGAAAGTTGCAGCAATGATACCAGGGAAGACAGTAGGAGATGTGATTAAGCAGCACAGAGAATTAGAAGAAGATGTTATTAATATAGAAGCTGGATTGATCCCAATTCCAGGTTATAAAAATAGTAGTAGTAGCACCACCACCACCACCGCAACAACCTCTCAAAAATTCACCTTAGATTGGGTTAACTCTTCTGGATTTGATTCCTTCAAATCTCATGGTGGGAAAAGATCCTCATCTTCAGGAAGACTCCCCGAACAAGAAAGAAAGAAAGGTGTTCCATGGACAGAAGAAGAACACAAACTGTTTCTTCTGGGGTTGAACAAGTATGGGAAAGGAGATTGGAGGAACATATCGCGGAATTTCGTGGTGACTCGGACTCCGACTCAGGTGGCTAGCCATGCTCAGAAGTACTTCATAAGGCAACTTTCAGGAGGGAAAGACAAGAGAAGAGCAAGCATTCATGATATAACAACAGTGAATCTGTCAGAAACCGCAAGAACTCCTTCTTCTTCTTCCTCTTTAGAAGACCACAACAACAACAACAACAAAAAGCAGGAGGCAAATCCATCAAGTGCTATTTTAGGTCATCAAGCACATTTTCAATGGAACCAGCAGGCAAATGCAGGAGCAATGGGGTTTAATCCTTATGGGGTTAACTCTTATGGGATAAAAGTGCAGGGCCAAAATAGTAATCTGCATAGAAGTGCTCTTCTTAATAATCACGATTCTTCTTCTTCTTACTTTGGATCACCTCATCAAACTCATCAGAACATGGTTTTTCAAATGCATTCTTCTTCTGCTCACCGCTTTTCTCATGCTTTATAG 999 0.4114 MKWEMDILSSSSHMSNPTWLIQDAMMNTTTTTKWTASENKLFENALAVYDKDTLDRWVKVAAMIPGKTVGDVIKQHRELEEDVINIEAGLIPIPGYKNSSSSTTTTTATTSQKFTLDWVNSSGFDSFKSHGGKRSSSSGRLPEQERKKGVPWTEEEHKLFLLGLNKYGKGDWRNISRNFVVTRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLSETARTPSSSSSLEDHNNNNNKKQEANPSSAILGHQAHFQWNQQANAGAMGFNPYGVNSYGIKVQGQNSNLHRSALLNNHDSSSSYFGSPHQTHQNMVFQMHSSSAHRFSHAL 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1718 332 ProSiteProfiles Myb-like domain profile. 144 196 IPR001005 -
Lele25g1718 332 SUPERFAMILY Homeodomain-like 32 88 IPR009057 -
Lele25g1718 332 ProSiteProfiles SANT domain profile. 152 200 IPR017884 -
Lele25g1718 332 FunFam transcription factor MYB1R1 150 201 - -
Lele25g1718 332 SUPERFAMILY Homeodomain-like 145 199 IPR009057 -
Lele25g1718 332 SMART sant 148 198 IPR001005 -
Lele25g1718 332 SMART sant 30 82 IPR001005 -
Lele25g1718 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 144 200 IPR017930 -
Lele25g1718 332 MobiDBLite consensus disorder prediction 218 246 - -
Lele25g1718 332 FunFam Transcription factor SRM1 26 93 - -
Lele25g1718 332 Gene3D - 27 93 - -
Lele25g1718 332 CDD SANT 33 75 IPR001005 -
Lele25g1718 332 Pfam Myb-like DNA-binding domain 151 196 IPR001005 -
Lele25g1718 332 Gene3D - 150 200 - -
Lele25g1718 332 CDD SANT 151 196 IPR001005 -
Lele25g1718 332 MobiDBLite consensus disorder prediction 126 150 - -
Lele25g1718 332 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 27 284 IPR043363 -
Lele25g1718 332 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 147 199 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1718 Lele-ChrLele25 24842819 24843997 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Lele25g1718 Myb_DNA-binding 2.5e-12 CL0123