Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1687 ATGTACGAGGAATTCCTTCTCTTCGGTTCTGTGCCATTCCTGTCTCTTGTTCTTCTGTCTAGGATATGTGTTAAGAATCTACCAAAATATGTTGCAGAGGATCGTCTACGGGACTTATTTTCACAAAAAGGAGAAATAACAGATGTAAAGCTTATGCGCACCAAAGATGGTAAGAGTCGGCAATTTGGTTTTATTGGGTTTCGTACAGAGGATGAAGCCAATGAAGCTATAAAGTATTTCAATAGATCTTACCTTGACACCTGTAGAATCACTTGTGAGGTGGCTCGAAAAGTTGGTGATCCAGACATTCCTCGGCCATGGAGTCGGCATTCATTGAAGAAAGGGGAAAAAGTGATCCAAGGTGGCAAGAAAGATGCTGAAAATAGAAGTAGTGCCAAGGTGCAAAGAGGTGGAGAGAGTTTGAAGGAGAGCACCGACATTGATGATCCACAGCTTCAAGAATTCCTTCAGGTTATGCAGCCTCGGGCTAAGACAAAATTGTGGGCAAATGATACATTATCAGTGTTGGATAATGTTGGTGAGAAGCAAAAAATAGCTGAGAATAAAAGCAAGGATCTTTCAGTTCCAAAGCATGATGAGTTACTTCAAAGTGGCTCATTAGATGATGAGTCCTCAGATGGCTCATTAGATGATGGGTCCTCAGATGGTCATGAGTCTGAGAAACCAAATAATCTTGTCCATGATGATGCCATTTCAGATATGGAATATTTCAAGAGTCGGGTGACAAAGGAATGGTCTGATACTGAGAACAGTGATGATGATGATGATGAAGACAACAATTCTTCTGCGAGCAATGACGACAACAAAGAAGACAATGATAGTCATGGTGATGAAGATGAAGAAAATTGTGATGATAAATCTTTTAAAGGAACTGGAAGAGTTGATGCTCAAAACTTAGACATGTCAGGCCTAGAAGATAACTGTAATGAGGATAGTGAACATGAAAAGGTTGAAGTGAGAGGTCCTTCTAATTCTTCTGGTGATGAAGAACCTGAGCGAACGGTCCTTTCATCATCTCTGGAAAATGAGAAGGGAGTTTTTGAGTCTTGTCGACTGTTTGTCCGTAATCTACCATATACAGCCACTGAGGAGGAACTTGAAGAACATTTCAGCAAGTTTGGCACTGTCTCACAGGTTCATCTAGTTGTCGATAAAGATACAAAAAGGTCCAAAGGAATAGCATATATTCATTTCACGCTTCCAGAATTTTCAGCCAGGGCACGAGAAGAGTTAGACAATTCAATTTTCCAAGGAAGATTACTGCATGTTTTGCCAGCTGTGCAAAGACCTTCAGACAGCAAGGAAAAGAATACATCAATGGATCAAAGCTCCAGAACTTTCAAGAAACAGAGAGAAGAAGAGCGGAAAGCAGCGGAAGCTAGTGGAGATACCAGAGCATGGAATAGTCTATTCATGCGCTCTGACACTGTTGTTGAAAACATTGCTCGTAAATATGGTGTAAGTAAAAGCGATTTACTTGACCGAGAAGCTGATGACCTTGCTGTGCGTATTGCTTTGGGAGAAACTCAAGTGATTGCAGAGACTAAAAAGGCCCTTAAAAATGCTGGCGTGAATGTGGAATCTTTGGAGGAATTTGCTAATGGCCAAAAAGTTGGTGTGAAAAGAAGCAACCATGTACTTTTAGTGAAGAACTTGCCATATGGTTCCTCGGAAAATGAGCTAGCAAAAATGTTCGGGAAATTTGGGAGTTTGGACAAAATAATCCTGCCTCCAACAAAGACATTGGCCTTGGTTGTCTACCTTGAACCGGCTGAAGCTCGAGCAGCTTTTAGAGGTTTAGCTTACAAGCGTTTCAAAGATGCGCCGTTGTATTTGGAATGGGCTCCTTCCAATGTACTTAGCCCAAGTTTAACATCTCAGAACAATGAAAAGAGTGGTGCAATTGGTGAAAATAAGGCCAAACGGCAGATATTGGAACAACATCTGGAAGTAGTATCAGATATGGACATTGATCAGGACAGAGTTGAGGCACGGTCTCTATTTGTCAAGAACCTCAATTTTAAGACATCAGATGAGAGTTTGAAGAATCATTTTAGTGAACACGTGAAAGAGGGAAGAATTTTGAGTGCCAAGGTGAAGAAGCATTTGAAAAATGGGAAACAGGTTTCCATGGGATTTGGATTTATCGAATTTGATTCTGTGGAGACTGCTACGAATGTTTGCAGAGATTTACAGGGGACTGTTTTGGATGGGCATGCACTTATATTACAACTCTGTCAAGTCAAGGACAGACAAGTCCCAAAAACAGTTGAGAAGGACAAAAGCTCAACAAAATTACTTGTAAGAAATGTAGCTTTTGAGGCAACAGAGAAGGAATTGAGACAATTGTTCAGCCCATTCGGCCAGATTAAGAGTTTAAGGTTGCCAATGAAGTTTGGAAATCATAGAGGTTTTGCTTTTGTGGAATATGTTACACAGCAAGAGGCACAAAATGCACTTAAAGCTCTTTCAAGCACCCACTTGTATGGCAGGCACCTGGTGTTAGAGAGAGCTAAGGAAGGCGAGAGTTTGGAGGAACTACGGGCTCGAACGGCTGCGCAATTTAGCGATGGCCAAAATGGATATCAAAAGTTATCCAAGAAAAGAAAGCACTTGTCAATCTTCGATGAAGGAAGGATGAAGTTTGAAAGAATTGCTGAGTAG 2685 0.4108 MYEEFLLFGSVPFLSLVLLSRICVKNLPKYVAEDRLRDLFSQKGEITDVKLMRTKDGKSRQFGFIGFRTEDEANEAIKYFNRSYLDTCRITCEVARKVGDPDIPRPWSRHSLKKGEKVIQGGKKDAENRSSAKVQRGGESLKESTDIDDPQLQEFLQVMQPRAKTKLWANDTLSVLDNVGEKQKIAENKSKDLSVPKHDELLQSGSLDDESSDGSLDDGSSDGHESEKPNNLVHDDAISDMEYFKSRVTKEWSDTENSDDDDDEDNNSSASNDDNKEDNDSHGDEDEENCDDKSFKGTGRVDAQNLDMSGLEDNCNEDSEHEKVEVRGPSNSSGDEEPERTVLSSSLENEKGVFESCRLFVRNLPYTATEEELEEHFSKFGTVSQVHLVVDKDTKRSKGIAYIHFTLPEFSARAREELDNSIFQGRLLHVLPAVQRPSDSKEKNTSMDQSSRTFKKQREEERKAAEASGDTRAWNSLFMRSDTVVENIARKYGVSKSDLLDREADDLAVRIALGETQVIAETKKALKNAGVNVESLEEFANGQKVGVKRSNHVLLVKNLPYGSSENELAKMFGKFGSLDKIILPPTKTLALVVYLEPAEARAAFRGLAYKRFKDAPLYLEWAPSNVLSPSLTSQNNEKSGAIGENKAKRQILEQHLEVVSDMDIDQDRVEARSLFVKNLNFKTSDESLKNHFSEHVKEGRILSAKVKKHLKNGKQVSMGFGFIEFDSVETATNVCRDLQGTVLDGHALILQLCQVKDRQVPKTVEKDKSSTKLLVRNVAFEATEKELRQLFSPFGQIKSLRLPMKFGNHRGFAFVEYVTQQEAQNALKALSSTHLYGRHLVLERAKEGESLEELRARTAAQFSDGQNGYQKLSKKRKHLSIFDEGRMKFERIAE 894
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1687 894 FunFam Multiple RNA-binding domain-containing protein 1 765 871 - -
Lele25g1687 894 CDD RRM3_RBM19_RRM2_MRD1 358 431 - -
Lele25g1687 894 SUPERFAMILY RNA-binding domain, RBD 21 107 IPR035979 GO:0003676
Lele25g1687 894 Gene3D - 763 872 IPR012677 -
Lele25g1687 894 Gene3D - 544 649 IPR012677 -
Lele25g1687 894 SMART rrm1_1 21 93 IPR000504 GO:0003723
Lele25g1687 894 SMART rrm1_1 553 620 IPR000504 GO:0003723
Lele25g1687 894 SMART rrm1_1 358 431 IPR000504 GO:0003723
Lele25g1687 894 SMART rrm1_1 772 843 IPR000504 GO:0003723
Lele25g1687 894 SMART rrm1_1 673 751 IPR000504 GO:0003723
Lele25g1687 894 MobiDBLite consensus disorder prediction 203 347 - -
Lele25g1687 894 FunFam Nucleotide/nucleic acid binding protein 668 762 - -
Lele25g1687 894 SUPERFAMILY RNA-binding domain, RBD 654 757 IPR035979 GO:0003676
Lele25g1687 894 CDD RRM1_MRD1 20 95 - -
Lele25g1687 894 MobiDBLite consensus disorder prediction 217 254 - -
Lele25g1687 894 FunFam Multiple RNA-binding domain-containing protein 1 543 645 - -
Lele25g1687 894 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 672 755 IPR000504 GO:0003723
Lele25g1687 894 Gene3D - 324 472 IPR012677 -
Lele25g1687 894 Gene3D - 19 143 IPR012677 -
Lele25g1687 894 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 674 748 IPR000504 GO:0003723
Lele25g1687 894 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 554 616 IPR000504 GO:0003723
Lele25g1687 894 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 359 429 IPR000504 GO:0003723
Lele25g1687 894 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 22 90 IPR000504 GO:0003723
Lele25g1687 894 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 773 840 IPR000504 GO:0003723
Lele25g1687 894 FunFam Multiple RNA-binding domain-containing protein 1 18 147 - -
Lele25g1687 894 CDD RRM4_RBM19_RRM3_MRD1 552 623 - -
Lele25g1687 894 Gene3D - 669 762 IPR012677 -
Lele25g1687 894 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 357 435 IPR000504 GO:0003723
Lele25g1687 894 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 20 97 IPR000504 GO:0003723
Lele25g1687 894 MobiDBLite consensus disorder prediction 434 467 - -
Lele25g1687 894 SUPERFAMILY RNA-binding domain, RBD 766 851 IPR035979 GO:0003676
Lele25g1687 894 PANTHER RNA-BINDING MOTIF PROTEIN 14B 761 860 - -
Lele25g1687 894 SUPERFAMILY RNA-binding domain, RBD 352 451 IPR035979 GO:0003676
Lele25g1687 894 MobiDBLite consensus disorder prediction 103 148 - -
Lele25g1687 894 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 771 847 IPR000504 GO:0003723
Lele25g1687 894 MobiDBLite consensus disorder prediction 314 334 - -
Lele25g1687 894 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 552 624 IPR000504 GO:0003723
Lele25g1687 894 MobiDBLite consensus disorder prediction 441 467 - -
Lele25g1687 894 CDD RRM6_RBM19_RRM5_MRD1 771 845 - -
Lele25g1687 894 SUPERFAMILY RNA-binding domain, RBD 549 637 IPR035979 GO:0003676
Lele25g1687 894 CDD RRM5_RBM19_like 672 753 IPR034423 -
Lele25g1687 894 SMART rrm2_1 673 751 IPR003954 GO:0003676
Lele25g1687 894 SMART rrm2_1 21 93 IPR003954 GO:0003676
Lele25g1687 894 SMART rrm2_1 358 431 IPR003954 GO:0003676
Lele25g1687 894 MobiDBLite consensus disorder prediction 103 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1687 Lele-ChrLele25 24505416 24515792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele25g1687 20 97 Eukaryotic Initiation Factors Gene Family AT1G49760 38.462 1.31e-08 56.6