Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g1685 ATGGGGGCTGGTGGTTCGAAGAATACGGACGGTGAGTTTAATGGCAGTGATGAAGACGGGCAGCTTTACGTTTCGCTTAAGATGGAGAACCGTAAGCTCACTGGGGAGTTCGTCCCTCATGTCTTTGGTTCTCTTCCGCTTGTGGGCTCCTGGGACTCTTCAAAAGCACTTCCAATGGAACGGGAATCTGTGTCAATGTGGGAGTTGAGCTTTGTTGTTCCACCGAATCATGAAACTTTGGATTTCAAGTTCCTCTTGAAGCCTAAGCACGGTAATGCACCTTGTATTGTTGAGGAGGGTCCGAACCGCCTGCTGATTAGGGGTGCATTGCAGGAGGATACCAGGCTTGCATTGTTTAGGATTGACAGTGCCGAAGTTCTTGAGTATCAAGTATTTGTTAAAGCAGATAGGGTTTCTCCGTTTGATCTTGCAGCTAGTTGGAGGGCCTATCAAGAAAATTTACGTCCTTCATCCGTGCGTGGGATTCCTGATGTCAGCATAAATTCAGAACCGCATACAGGTGGTGAGAATGGCTCTTTTTTGGGTCTGGATCTTGATCTTGAACACTATGTTGTCCCGGCTCCTTCTACTTCTGTGAATTCAATTGTATATACAGCTAACATGACAGAGAATCCCAGATCACCTGTTGCTGGGTCTGGCAGCAGTACATATTCCATGAGGGATGTTGATGTTCCAGTTGATCGGCAAACAATTTTTAAGGGGATGGAGATTATTGTTCCAGATCCATCAATGGCGTGTCAAGGTTCTGGACTGGTTGAATCCAAGTCAGTGGGCACATTTACAGCACTGCAAAAGCAAGATGGTCAGAGGGGATATTTTGTTCATAGGGGCGTTGGGTCCCCTAGACTTGTAAAATCTGGCTCTACAACTTTCATGACTAATCTTAATCTGGAAACTGATACCAAGAATTCAATGCCAGCAGCTGCTGGAGCTGTTGCAGCTGCAGCTGTGGCTGACCAGATGCTGGGTCCCAAGGAGGATAGACATTTAGCAATTATCCTGGTGGGTTTGCCAGCTCGAGGTAAAACTTTTACTGCAGCTAAACTTACAAGATATCTTCGTTGGTTAGGTCATGAAACCAAGCACTTCAATGTTGGGAAGTATCGCCGCCTTAAGCATGGAACTAATCAGTCTGCTGACTTTTTTCGAGCTGACAATCCCGAAGGCATGGAGGCCCGCAATGAGGTAGCAGCTTTGGCATTTGAAGATATGATATCTTGGATGCAAGATGGTGGCCAGGTTGGGGTATTTGATGCCACGAACAGTACCAAGAAGAGAAGAAACATGCTGATGAAATTGGCTGAAGGAAGATGCAAGATTATATTTCTGGAAACAATATGCAATGATGTAAACATAATAGAAAGAAATATACGTCTTAAAATTCAGCAAAGTCCTGACTATGCAGAAGAGCCAGATTTCCTAGCGGGGATGCAAGACTTTAAAAACCGTCTCGTCAATTATGAGAAGGTTTATGAACCTGTAGAAGAAGGATCTTACATTAAAATGATTGATATGGTCAGTGGACATGGTGGGCAAATACAAGTGAACAATATCAGTGGCTACCTTCCTGGTCGGATTGTTTTCTTCCTGGTTAATACACACCTTACACCACGCCCCATATTACTTACTAGACATGGAGAAAGTCAGGACAATGTGAGAGGAAGAATTGGTGGGGATACTGCAGTGAGTGAGACTGGACAACTGTACACAAAGAAGCTTGCCAACTTTGTAGGAAAGCGGCTCAAATCAGAACGGGCTGCTTCTATATGGACTAGCACATTGCAACGAACAATTCTGACTGCAAGCCCAATTGTTGGATTTCCCAAGATACAATGGCGTGCTCTTGATGAGATAAATGCTGGGGCATGTGACGGGATGACTTATGAAGAGATCAAGAAGAACATGCCAGAGGAGTATGAATCTAGGAAGAAAGACAAGCTTAGGTATCGATATCCTCGTGGAGAATCTTATTTGGATGTTATTCAAAGGTTAGAGCCTGTGATTATTGAGCTTGAGAGACAACGTGCACCTGTTATTGTAATATCTCACCAGGCAGTTTTGAGGGCATTATATGCTTATTTTGCTGACAGGCCTTTGAAAGAAATTCCACACATAGAGGTGCCTCTTCATACAATAATAGAGATACAAATGGGAGTTTCAGGTGTCCAAGAGAAACGATACAAACTAATGGACTGA 2217 0.4402 MGAGGSKNTDGEFNGSDEDGQLYVSLKMENRKLTGEFVPHVFGSLPLVGSWDSSKALPMERESVSMWELSFVVPPNHETLDFKFLLKPKHGNAPCIVEEGPNRLLIRGALQEDTRLALFRIDSAEVLEYQVFVKADRVSPFDLAASWRAYQENLRPSSVRGIPDVSINSEPHTGGENGSFLGLDLDLEHYVVPAPSTSVNSIVYTANMTENPRSPVAGSGSSTYSMRDVDVPVDRQTIFKGMEIIVPDPSMACQGSGLVESKSVGTFTALQKQDGQRGYFVHRGVGSPRLVKSGSTTFMTNLNLETDTKNSMPAAAGAVAAAAVADQMLGPKEDRHLAIILVGLPARGKTFTAAKLTRYLRWLGHETKHFNVGKYRRLKHGTNQSADFFRADNPEGMEARNEVAALAFEDMISWMQDGGQVGVFDATNSTKKRRNMLMKLAEGRCKIIFLETICNDVNIIERNIRLKIQQSPDYAEEPDFLAGMQDFKNRLVNYEKVYEPVEEGSYIKMIDMVSGHGGQIQVNNISGYLPGRIVFFLVNTHLTPRPILLTRHGESQDNVRGRIGGDTAVSETGQLYTKKLANFVGKRLKSERAASIWTSTLQRTILTASPIVGFPKIQWRALDEINAGACDGMTYEEIKKNMPEEYESRKKDKLRYRYPRGESYLDVIQRLEPVIIELERQRAPVIVISHQAVLRALYAYFADRPLKEIPHIEVPLHTIIEIQMGVSGVQEKRYKLMD 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g1685 738 FunFam 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 21 113 - -
Lele25g1685 738 Gene3D - 336 542 IPR027417 -
Lele25g1685 738 PRINTS 6-phosphofructo-2-kinase family signature 421 435 IPR003094 GO:0003824|GO:0005524|GO:0006003
Lele25g1685 738 PRINTS 6-phosphofructo-2-kinase family signature 525 546 IPR003094 GO:0003824|GO:0005524|GO:0006003
Lele25g1685 738 PRINTS 6-phosphofructo-2-kinase family signature 627 643 IPR003094 GO:0003824|GO:0005524|GO:0006003
Lele25g1685 738 PRINTS 6-phosphofructo-2-kinase family signature 547 569 IPR003094 GO:0003824|GO:0005524|GO:0006003
Lele25g1685 738 PRINTS 6-phosphofructo-2-kinase family signature 446 460 IPR003094 GO:0003824|GO:0005524|GO:0006003
Lele25g1685 738 PANTHER 6-PHOSPHOFRUCTO-2-KINASE/FRUCTOSE-2,6-BISPHOSPHATASE 308 737 IPR003094 GO:0003824|GO:0005524|GO:0006003
Lele25g1685 738 PIRSF 6PFK_fruc_bisph_Ptase 13 738 - -
Lele25g1685 738 FunFam 6-phosphofructo-2-kinase/fructose-2, 6-bisphosphatase 543 738 - -
Lele25g1685 738 SMART PGAM_5 546 697 IPR013078 -
Lele25g1685 738 Pfam 6-phosphofructo-2-kinase 328 544 IPR013079 GO:0003873|GO:0005524|GO:0006000
Lele25g1685 738 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 338 545 IPR027417 -
Lele25g1685 738 ProSiteProfiles CBM20 (carbohydrate binding type-20) domain profile. 16 121 IPR002044 GO:2001070
Lele25g1685 738 Pfam Histidine phosphatase superfamily (branch 1) 547 728 IPR013078 -
Lele25g1685 738 Gene3D - 543 738 IPR029033 -
Lele25g1685 738 SUPERFAMILY Phosphoglycerate mutase-like 547 735 IPR029033 -
Lele25g1685 738 ProSitePatterns Phosphoglycerate mutase family phosphohistidine signature. 549 558 IPR001345 GO:0003824
Lele25g1685 738 CDD HP_PGM_like 547 724 IPR013078 -
Lele25g1685 738 FunFam 6-phosphofructo-2-kinase/fructose-2, 6-bisphosphatase-like isoform X1 335 542 - -
Lele25g1685 738 Pfam Starch binding domain 40 105 IPR002044 GO:2001070
Lele25g1685 738 Gene3D Immunoglobulins 21 114 IPR013783 -
Lele25g1685 738 SUPERFAMILY Starch-binding domain-like 19 108 IPR013784 GO:0030246
Lele25g1685 738 SMART CBM_20_2 21 114 IPR002044 GO:2001070
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g1685 Lele-ChrLele25 24481171 24491055 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g1213 01 7290296 7304754 Lele25g1685 25 24481171 24491055 CCT
Lele02g1484 02 19039904 19042677 Lele25g1685 25 24481171 24491055 CCT
Lele03g1226 03 7252443 7268149 Lele25g1685 25 24481171 24491055 CCT
Lele04g1467 04 19885876 19896997 Lele25g1685 25 24481171 24491055 CCT
Lele25g1685 25 24481171 24491055 Lele27g0403 27 3703462 3713054 hybridization
Lele25g1685 25 24481171 24491055 Lele28g1687 28 19784625 19791341 hybridization